Agrobacterium genomosp. 6 str. NCPPB 925

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium genomosp. 6 str. NCPPB 925 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses flagella, enabling motility. It is noted for having a single replicon, which is relevant to its genetic organization and replication processes. The strain is cataloged under the accession number FBWM00000000.1, indicating its availability for further study and its inclusion in microbial databases. The classification within the Agrobacterium genus suggests potential roles in plant interactions, particularly in relation to its pathogenicity and symbiotic associations with plants. Ecologically, Agrobacterium species are well-known for their ability to transfer DNA to plant cells, a mechanism that can lead to tumor formation in plants. Understanding the genetic and phenotypic traits of Agrobacterium genomosp. 6 str. NCPPB 925 contributes to a broader comprehension of its ecological roles, particularly in agriculture and biotechnology. The presence of flagella suggests that this strain may also exhibit motility to reach hosts or specific environmental niches, which could be crucial for its survival and interaction with plant systems. Thus, the study of this bacterium may provide insights into its potential applications in genetic engineering and plant disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. NCPPB 925
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium genomosp. 6 str. NCPPB 925
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 6 str. NCPPB 925 genome assembly, contig:

Gene Summary

Adenine Count

1248213 bp

Thymine Count

1252369 bp

Guanine Count

1809571 bp

Cytosine Count

1796078 bp

Genome Length

6106231 bp

Protein-coding Genes

5935 genes

Non-Coding Genes

249 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative secretion protein (hlyd family)AGR6A_Cc10068Not AvailableNegative70347 - 7165747911.6
putative abc transporter family, hlyb subfamilyAGR6A_Cc10069Not AvailableNegative71654 - 7336660648.2
hypothetical proteinAGR6A_Cc10070Not AvailableNegative73363 - 735938399.85
hemolysin-type calcium-binding region (fragment)AGR6A_Cc10071Not AvailablePositive73814 - 7554458795.3
trans-translation protein, binds tmrna and trna (ssra-binding protein)AGR6A_Cc100001Not AvailableNegative75686 - 7616818487.3
4-hydroxy-tetrahydrodipicolinate synthaseAGR6A_Cc100002Not AvailableNegative76393 - 7727731104.4
soluble lytic transglycosylaseAGR6A_Cc100003Not AvailablePositive77639 - 7971174480.1
putative outer membrane protein y4fjAGR6A_Cc100004Not AvailableNegative79873 - 8095838475.1
hypothetical proteinAGR6A_Cc100005Not AvailableNegative81187 - 814419597.59
putative outer membrane protein y4fjAGR6A_Cc100006Not AvailableNegative81494 - 8257938486.3

Displaying genes 331 – 340 of 2747 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.