Agrobacterium genomosp. 6 str. NCPPB 925

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium genomosp. 6 str. NCPPB 925 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses flagella, enabling motility. It is noted for having a single replicon, which is relevant to its genetic organization and replication processes. The strain is cataloged under the accession number FBWM00000000.1, indicating its availability for further study and its inclusion in microbial databases. The classification within the Agrobacterium genus suggests potential roles in plant interactions, particularly in relation to its pathogenicity and symbiotic associations with plants. Ecologically, Agrobacterium species are well-known for their ability to transfer DNA to plant cells, a mechanism that can lead to tumor formation in plants. Understanding the genetic and phenotypic traits of Agrobacterium genomosp. 6 str. NCPPB 925 contributes to a broader comprehension of its ecological roles, particularly in agriculture and biotechnology. The presence of flagella suggests that this strain may also exhibit motility to reach hosts or specific environmental niches, which could be crucial for its survival and interaction with plant systems. Thus, the study of this bacterium may provide insights into its potential applications in genetic engineering and plant disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. NCPPB 925
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium genomosp. 6 str. NCPPB 925
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 6 str. NCPPB 925 genome assembly, contig:

Gene Summary

Adenine Count

1248213 bp

Thymine Count

1252369 bp

Guanine Count

1809571 bp

Cytosine Count

1796078 bp

Genome Length

6106231 bp

Protein-coding Genes

5935 genes

Non-Coding Genes

249 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetr family transcriptional regulatorAGR6A_Cc60194Not AvailablePositive1996487 - 199714023782.4
ketol-acid reductoisomerase (acetohydroxy-acid isomeroreductase) (alpha-keto-beta-hydroxylacil reductoisomerase)AGR6A_Cc60195Not AvailablePositive1997188 - 199820736675.2
hypothetical proteinAGR6A_Cc60196Not AvailableNegative1998260 - 19984637654.09
hypothetical proteinAGR6A_Cc60197Not AvailablePositive1998500 - 19985742839.39
putative abc-type ribose transport system, auxiliary componentAGR6A_Cc60198Not AvailableNegative1998831 - 199928616222.5
2-aminoadipate transaminaseAGR6A_Cc60199Not AvailablePositive1999561 - 200080544854.6
abc transporter, substrate binding proteinAGR6A_Cc60200Not AvailablePositive2001139 - 200212234508.4
abc transporter, membrane spanning proteinAGR6A_Cc60201Not AvailablePositive2002132 - 200382660097.4
abc transporter, nucleotide binding/atpase proteinAGR6A_Cc60202Not AvailablePositive2003814 - 200484237056.6
conserved hypothetical proteinAGR6A_Cc60203Not AvailablePositive2005043 - 200615242189.1

Displaying genes 2191 – 2200 of 2747 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.