Agrobacterium genomosp. 6 str. NCPPB 925

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium genomosp. 6 str. NCPPB 925 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses flagella, enabling motility. It is noted for having a single replicon, which is relevant to its genetic organization and replication processes. The strain is cataloged under the accession number FBWM00000000.1, indicating its availability for further study and its inclusion in microbial databases. The classification within the Agrobacterium genus suggests potential roles in plant interactions, particularly in relation to its pathogenicity and symbiotic associations with plants. Ecologically, Agrobacterium species are well-known for their ability to transfer DNA to plant cells, a mechanism that can lead to tumor formation in plants. Understanding the genetic and phenotypic traits of Agrobacterium genomosp. 6 str. NCPPB 925 contributes to a broader comprehension of its ecological roles, particularly in agriculture and biotechnology. The presence of flagella suggests that this strain may also exhibit motility to reach hosts or specific environmental niches, which could be crucial for its survival and interaction with plant systems. Thus, the study of this bacterium may provide insights into its potential applications in genetic engineering and plant disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. NCPPB 925
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium genomosp. 6 str. NCPPB 925
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 6 str. NCPPB 925 genome assembly, contig:

Gene Summary

Adenine Count

1248213 bp

Thymine Count

1252369 bp

Guanine Count

1809571 bp

Cytosine Count

1796078 bp

Genome Length

6106231 bp

Protein-coding Genes

5935 genes

Non-Coding Genes

249 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate dehydrogenase, fe-s proteinAGR6A_Cc190087Not AvailablePositive1417514 - 141829329551.5
outer membrane lipoprotein omp19 homologAGR6A_Cc190088Not AvailablePositive1418498 - 141904018356.5
putative atpase (yhcm) afg1 familyAGR6A_Cc190089Not AvailablePositive1419134 - 142029743186.4
malate dehydrogenaseAGR6A_Cc190090Not AvailablePositive1420476 - 142143833583.1
succinyl-coa synthetase, beta subunitAGR6A_Cc190091Not AvailablePositive1421471 - 142266441861.5
succinyl-coa synthetase, alpha subunit, nad(p)-bindingAGR6A_Cc190092Not AvailablePositive1422682 - 142358431141.9
2-oxoglutarate decarboxylase, component of the 2-oxoglutarate dehydrogenase complex, thiamin-bindingAGR6A_Cc190093Not AvailablePositive1423762 - 1426758112291.0
dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (e2)AGR6A_Cc190094Not AvailablePositive1426812 - 142803842562.4
hypothetical proteinAGR6A_Cc190095Not AvailableNegative1428041 - 14281363552.12
conserved membrane hypothetical proteinAGR6A_Cc190096Not AvailablePositive1428062 - 142847214512.1

Displaying genes 1621 – 1630 of 2747 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.