Agrobacterium genomosp. 6 str. NCPPB 925

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium genomosp. 6 str. NCPPB 925 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses flagella, enabling motility. It is noted for having a single replicon, which is relevant to its genetic organization and replication processes. The strain is cataloged under the accession number FBWM00000000.1, indicating its availability for further study and its inclusion in microbial databases. The classification within the Agrobacterium genus suggests potential roles in plant interactions, particularly in relation to its pathogenicity and symbiotic associations with plants. Ecologically, Agrobacterium species are well-known for their ability to transfer DNA to plant cells, a mechanism that can lead to tumor formation in plants. Understanding the genetic and phenotypic traits of Agrobacterium genomosp. 6 str. NCPPB 925 contributes to a broader comprehension of its ecological roles, particularly in agriculture and biotechnology. The presence of flagella suggests that this strain may also exhibit motility to reach hosts or specific environmental niches, which could be crucial for its survival and interaction with plant systems. Thus, the study of this bacterium may provide insights into its potential applications in genetic engineering and plant disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. NCPPB 925
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium genomosp. 6 str. NCPPB 925
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 6 str. NCPPB 925 genome assembly, contig:

Gene Summary

Adenine Count

1248213 bp

Thymine Count

1252369 bp

Guanine Count

1809571 bp

Cytosine Count

1796078 bp

Genome Length

6106231 bp

Protein-coding Genes

5935 genes

Non-Coding Genes

249 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ammonium transport protein (amt family)AGR6A_Cc180004Not AvailableNegative1287378 - 128872746588.8
regulatory protein (p-ii 2) for nitrogen assimilation, regulates glnl (nrii), glne (atase), and amtb (ammonium transporter) (fragment)AGR6A_Cc180005Not AvailableNegative1288757 - 128910712569.3
putative acyl-coa thioesteraseAGR6A_Cc180006Not AvailableNegative1289321 - 129020533205.6
2-octaprenyl-6-methoxyphenyl hydroxylaseAGR6A_Cc180007Not AvailablePositive1290292 - 129150643409.2
conserved hypothetical proteinAGR6A_Cc180008Not AvailableNegative1291608 - 129191011264.5
conserved hypothetical proteinAGR6A_Cc180009Not AvailablePositive1291955 - 1295056113980.0
conserved hypothetical proteinAGR6A_Cc180010Not AvailablePositive1295061 - 129547715771.8
ferredoxin ii (fragment)AGR6A_Cc180011Not AvailablePositive1295635 - 129597312563.8
dna polymerase iii subunit deltaAGR6A_Cc180012Not AvailableNegative1296036 - 129707337729.5
conserved hypothetical proteinAGR6A_Cc180013Not AvailableNegative1297085 - 129763319530.2

Displaying genes 1501 – 1510 of 2747 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.