Agrobacterium tumefaciens str. CFBP 5621

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. CFBP 5621 is a Gram-negative, rod-shaped bacterium that exhibits mobility, facilitated by the presence of flagella. This organism is classified as an aerobe, indicating its requirement for oxygen to thrive. It is mesophilic, with an optimal growth temperature of 25°C, which allows it to inhabit a range of environments conducive to its metabolic activities. The bacterium possesses a single replicon and is characterized by having two membranes, typical of its Gram-negative classification. A. tumefaciens str. CFBP 5621 is known to be free-living, which suggests it does not rely on a host organism for survival and can exist independently in various habitats. This species is particularly noteworthy due to its ecological role in the environment. Agrobacterium tumefaciens is well-known for its ability to transfer DNA to plant cells, which can lead to crown gall tumors in plants. This capability highlights its significance in both natural ecosystems and agricultural contexts, where it can affect plant health and biodiversity. Understanding the traits and behaviors of A. tumefaciens str. CFBP 5621 contributes to our comprehension of microbial interactions within ecosystems and their potential applications in biotechnology and plant pathology. Accession information for this strain is available under FBWF00000000.1, providing a reference point for further research and genetic analysis.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCFBP 5621

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. CFBP 5621
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. CFBP 5621 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative atpase (yhcm) afg1 familyAGR4B_Cc10256Not AvailablePositive272527 - 27369043101.2
malate dehydrogenaseAGR4B_Cc10257Not AvailablePositive273869 - 27483133567.1
succinyl-coa synthetase, beta subunitAGR4B_Cc10258Not AvailablePositive274863 - 27605641843.6
succinyl-coa synthetase, alpha subunit, nad(p)-bindingAGR4B_Cc10259Not AvailablePositive276075 - 27697731095.8
2-oxoglutarate decarboxylase, component of the 2-oxoglutarate dehydrogenase complex, thiamin-bindingAGR4B_Cc10260Not AvailablePositive277152 - 280148112163.0
dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (e2)AGR4B_Cc10261Not AvailablePositive280202 - 28142542481.3
conserved membrane hypothetical proteinAGR4B_Cc10262Not AvailablePositive281448 - 28185814612.3
rhtb family transporterAGR4B_Cc10263Not AvailablePositive281869 - 28251023189.1
dihydrolipoamide dehydrogenase, fad/nad(p)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexesAGR4B_Cc10264Not AvailablePositive282577 - 28398348666.0
cytochrome b561AGR4B_Cc10265Not AvailablePositive284111 - 28461118745.2

Displaying genes 301 – 310 of 1762 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.