Agrobacterium tumefaciens str. CFBP 5621

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. CFBP 5621 is a Gram-negative, rod-shaped bacterium that exhibits mobility, facilitated by the presence of flagella. This organism is classified as an aerobe, indicating its requirement for oxygen to thrive. It is mesophilic, with an optimal growth temperature of 25°C, which allows it to inhabit a range of environments conducive to its metabolic activities. The bacterium possesses a single replicon and is characterized by having two membranes, typical of its Gram-negative classification. A. tumefaciens str. CFBP 5621 is known to be free-living, which suggests it does not rely on a host organism for survival and can exist independently in various habitats. This species is particularly noteworthy due to its ecological role in the environment. Agrobacterium tumefaciens is well-known for its ability to transfer DNA to plant cells, which can lead to crown gall tumors in plants. This capability highlights its significance in both natural ecosystems and agricultural contexts, where it can affect plant health and biodiversity. Understanding the traits and behaviors of A. tumefaciens str. CFBP 5621 contributes to our comprehension of microbial interactions within ecosystems and their potential applications in biotechnology and plant pathology. Accession information for this strain is available under FBWF00000000.1, providing a reference point for further research and genetic analysis.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCFBP 5621

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. CFBP 5621
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. CFBP 5621 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protease htpx homologAGR4B_Cc10064Not AvailablePositive65934 - 6689934787.0
putative ribosomal rna small subunit methyltransferase b (rrna (cytosine-c(5)-)-methyltransferase) (16s rrna m5c967 methyltransferase)(rsmb)AGR4B_Cc10065Not AvailablePositive66896 - 6828149846.9
conserved hypothetical proteinAGR4B_Cc10066Not AvailablePositive68383 - 7007462766.4
bifunctional purine biosynthesis protein purh (includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (aicar transformylase)AGR4B_Cc10067Not AvailablePositive70227 - 7184357041.1
putative d-galactarate dehydratase/altronate hydrolaseAGR4B_Cc10068Not AvailableNegative71928 - 7346054717.2
gntr family transcriptional regulatorAGR4B_Cc10069Not AvailableNegative73505 - 7419725673.8
putative sugar (d-ribose) abc transporter (atp-binding protein)AGR4B_Cc10070Not AvailablePositive74454 - 7601957199.9
ribose transport system permease protein rbscAGR4B_Cc10071Not AvailablePositive76028 - 7705034984.8
abc transporter, substrate binding protein (ribose)AGR4B_Cc10072Not AvailablePositive77126 - 7806732893.5
putative aldo/keto reductaseAGR4B_Cc10073Not AvailablePositive78165 - 7917837119.9

Displaying genes 111 – 120 of 1762 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.