Agrobacterium tumefaciens str. CFBP 5621

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. CFBP 5621 is a Gram-negative, rod-shaped bacterium that exhibits mobility, facilitated by the presence of flagella. This organism is classified as an aerobe, indicating its requirement for oxygen to thrive. It is mesophilic, with an optimal growth temperature of 25°C, which allows it to inhabit a range of environments conducive to its metabolic activities. The bacterium possesses a single replicon and is characterized by having two membranes, typical of its Gram-negative classification. A. tumefaciens str. CFBP 5621 is known to be free-living, which suggests it does not rely on a host organism for survival and can exist independently in various habitats. This species is particularly noteworthy due to its ecological role in the environment. Agrobacterium tumefaciens is well-known for its ability to transfer DNA to plant cells, which can lead to crown gall tumors in plants. This capability highlights its significance in both natural ecosystems and agricultural contexts, where it can affect plant health and biodiversity. Understanding the traits and behaviors of A. tumefaciens str. CFBP 5621 contributes to our comprehension of microbial interactions within ecosystems and their potential applications in biotechnology and plant pathology. Accession information for this strain is available under FBWF00000000.1, providing a reference point for further research and genetic analysis.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCFBP 5621

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. CFBP 5621
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. CFBP 5621 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoylalanyl-d-glutamate 2,6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase)AGR4B_Cc60203Not AvailablePositive1103386 - 110485551242.2
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseAGR4B_Cc60204Not AvailablePositive1104879 - 110628549563.6
phospho-n-acetylmuramoyl-pentapeptide transferaseAGR4B_Cc60205Not AvailablePositive1106309 - 110740939095.1
udp-n-acetylmuramoylalanine-d-glutamate ligaseAGR4B_Cc60206Not AvailablePositive1107413 - 110882248950.4
essential cell division protein (stabilizes ftsz ring)AGR4B_Cc60207Not AvailablePositive1108828 - 110998242387.0
udp-n-acetylglucosamine:n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseAGR4B_Cc60208Not AvailablePositive1109989 - 111112538972.8
udp-n-acetyl-muramate:alanine ligase, l-alanine adding enzymeAGR4B_Cc60209Not AvailablePositive1111122 - 111253750745.7
udp-n-acetylenolpyruvoylglucosamine reductase (murb-like)AGR4B_Cc60210Not AvailablePositive1112534 - 111349934876.9
ggdef family proteinAGR4B_Cc60211Not AvailablePositive1113706 - 111450929443.0
putative transporterAGR4B_Cc60212Not AvailableNegative1114599 - 111590346789.1

Displaying genes 1121 – 1130 of 1762 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.