Frankia sp. DSM 45899

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Parafrankia

Description

Frankia sp. DSM 45899 is a nitrogen-fixing actinobacterium characterized by its single replicon. This organism is notable for its role in symbiotic relationships with certain plants, particularly in forming root nodules that facilitate nitrogen fixation. The specific genome accession for Frankia sp. DSM 45899 is FAOZ00000000.1, which provides a reference for genomic studies and further exploration of its functional capabilities. As a member of the genus Frankia, this species contributes to the nitrogen cycle, which is vital for soil fertility and plant growth. The ability to fix atmospheric nitrogen allows Frankia sp. DSM 45899 to enhance nutrient availability in its environment, particularly in nutrient-poor soils. This ecological role is crucial for the establishment and sustainability of plant communities in such habitats. The single replicon characteristic suggests a streamlined genetic architecture, which may be advantageous for efficient regulation of essential metabolic processes, including those involved in nitrogen fixation. Understanding the specific traits and genetic makeup of Frankia sp. DSM 45899 can offer insights into the mechanisms behind its symbiotic relationships and its potential applications in agriculture and ecological restoration. In summary, Frankia sp. DSM 45899, with its unique traits and ecological functions, underscores the importance of nitrogen-fixing bacteria in enhancing soil health and plant growth, contributing significantly to ecosystem dynamics.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusParafrankia
SpeciesParafrankia irregularis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frankia sp. DSM 45899 genome assembly IMG-taxon 2634166352

Gene Summary

Adenine Count

1391200 bp

Thymine Count

1377204 bp

Guanine Count

3358827 bp

Cytosine Count

3402911 bp

Genome Length

9537992 bp

Protein-coding Genes

7790 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainGa0074812_109168Not AvailableNegative4337698 - 433835424355.6
conserved hypothetical proteinGa0074812_109169Not AvailablePositive4338568 - 433897215249.9
imidazolonepropionaseGa0074812_109170Not AvailablePositive4339280 - 434049142926.4
d-lactate dehydrogenaseGa0074812_109171Not AvailablePositive4340681 - 434167935347.5
putative zinc-fingerGa0074812_109172Not AvailableNegative4341799 - 434312145037.3
rna polymerase sigma-70 factor, ecf subfamilyGa0074812_109173Not AvailableNegative4343118 - 434377424130.7
high-affinity nickel-transport proteinGa0074812_109174Not AvailableNegative4343818 - 434550057229.8
tetratricopeptide repeat-containing proteinGa0074812_109175Not AvailableNegative4345497 - 434693650477.5
protein of unknown function (duf4331)Ga0074812_109176Not AvailablePositive4347152 - 434861251662.9
hypothetical proteinGa0074812_109177Not AvailablePositive4348627 - 434905814695.6

Displaying genes 3481 – 3490 of 7847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.