Frankia sp. DSM 45899

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Parafrankia

Description

Frankia sp. DSM 45899 is a nitrogen-fixing actinobacterium characterized by its single replicon. This organism is notable for its role in symbiotic relationships with certain plants, particularly in forming root nodules that facilitate nitrogen fixation. The specific genome accession for Frankia sp. DSM 45899 is FAOZ00000000.1, which provides a reference for genomic studies and further exploration of its functional capabilities. As a member of the genus Frankia, this species contributes to the nitrogen cycle, which is vital for soil fertility and plant growth. The ability to fix atmospheric nitrogen allows Frankia sp. DSM 45899 to enhance nutrient availability in its environment, particularly in nutrient-poor soils. This ecological role is crucial for the establishment and sustainability of plant communities in such habitats. The single replicon characteristic suggests a streamlined genetic architecture, which may be advantageous for efficient regulation of essential metabolic processes, including those involved in nitrogen fixation. Understanding the specific traits and genetic makeup of Frankia sp. DSM 45899 can offer insights into the mechanisms behind its symbiotic relationships and its potential applications in agriculture and ecological restoration. In summary, Frankia sp. DSM 45899, with its unique traits and ecological functions, underscores the importance of nitrogen-fixing bacteria in enhancing soil health and plant growth, contributing significantly to ecosystem dynamics.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusParafrankia
SpeciesParafrankia irregularis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frankia sp. DSM 45899 genome assembly IMG-taxon 2634166352

Gene Summary

Adenine Count

1391200 bp

Thymine Count

1377204 bp

Guanine Count

3358827 bp

Cytosine Count

3402911 bp

Genome Length

9537992 bp

Protein-coding Genes

7790 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesGa0074812_105379Not AvailableNegative2729306 - 272998324987.3
cbs domain-containing proteinGa0074812_105380Not AvailableNegative2730092 - 273047813698.6
branched-chain amino acid aminotransferaseGa0074812_105381Not AvailableNegative2730717 - 273164033594.9
3-isopropylmalate dehydrogenaseGa0074812_105382Not AvailableNegative2731883 - 273291135760.5
eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant)Ga0074812_105383Not AvailablePositive2733455 - 273472345291.2
predicted small metal-binding proteinGa0074812_105384Not AvailablePositive2734720 - 273502811424.7
2-isopropylmalate synthaseGa0074812_105385Not AvailableNegative2735102 - 273683262860.3
septum formationGa0074812_105386Not AvailableNegative2737119 - 273802730855.1
d-3-phosphoglycerate dehydrogenaseGa0074812_105387Not AvailableNegative2738098 - 273968754526.7
ketol-acid reductoisomeraseGa0074812_105388Not AvailableNegative2739967 - 274096235527.4

Displaying genes 2251 – 2260 of 7847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.