Frankia sp. DSM 45899

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Parafrankia

Description

Frankia sp. DSM 45899 is a nitrogen-fixing actinobacterium characterized by its single replicon. This organism is notable for its role in symbiotic relationships with certain plants, particularly in forming root nodules that facilitate nitrogen fixation. The specific genome accession for Frankia sp. DSM 45899 is FAOZ00000000.1, which provides a reference for genomic studies and further exploration of its functional capabilities. As a member of the genus Frankia, this species contributes to the nitrogen cycle, which is vital for soil fertility and plant growth. The ability to fix atmospheric nitrogen allows Frankia sp. DSM 45899 to enhance nutrient availability in its environment, particularly in nutrient-poor soils. This ecological role is crucial for the establishment and sustainability of plant communities in such habitats. The single replicon characteristic suggests a streamlined genetic architecture, which may be advantageous for efficient regulation of essential metabolic processes, including those involved in nitrogen fixation. Understanding the specific traits and genetic makeup of Frankia sp. DSM 45899 can offer insights into the mechanisms behind its symbiotic relationships and its potential applications in agriculture and ecological restoration. In summary, Frankia sp. DSM 45899, with its unique traits and ecological functions, underscores the importance of nitrogen-fixing bacteria in enhancing soil health and plant growth, contributing significantly to ecosystem dynamics.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusParafrankia
SpeciesParafrankia irregularis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frankia sp. DSM 45899 genome assembly IMG-taxon 2634166352

Gene Summary

Adenine Count

1391200 bp

Thymine Count

1377204 bp

Guanine Count

3358827 bp

Cytosine Count

3402911 bp

Genome Length

9537992 bp

Protein-coding Genes

7790 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional repressor nrdrGa0074812_105248Not AvailableNegative2574638 - 257521920410.2
lysm domain-containing proteinGa0074812_105249Not AvailableNegative2575521 - 25757728772.73
hypothetical proteinGa0074812_105250Not AvailablePositive2576106 - 257675023077.0
repressor lexaGa0074812_105251Not AvailablePositive2576860 - 257760926391.8
gtp-binding protein hflxGa0074812_105252Not AvailableNegative2577717 - 257922553748.3
diaminopimelate epimeraseGa0074812_105253Not AvailableNegative2579415 - 258035031919.2
eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant)Ga0074812_105254Not AvailableNegative2580347 - 258148639888.3
trna dimethylallyltransferaseGa0074812_105255Not AvailableNegative2581540 - 258243932554.1
hypothetical proteinGa0074812_105256Not AvailableNegative2582436 - 258323026894.2
pp_02103Ga0074812_105257Not AvailableNegative2583227 - 2584714Not Available

Displaying genes 2121 – 2130 of 7847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.