MAG TPA_asm: Rhizobium sp.

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

MAG TPA_asm: Rhizobium sp. is a Gram-negative bacterium primarily located in the rhizosphere of Borj Cedria soil. This organism exhibits an aerobic oxygen requirement and has a rod-shaped morphology equipped with true flagella, facilitating its motility in soil environments. It thrives optimally at a temperature of 28°C. This Rhizobium species has a single replicon and shows a diverse range of host associations, including various plants such as Vicia faba, Acacia saligna, and Trifolium pratense, among others. Its interaction with these host plants is noteworthy, as Rhizobium spp. are well-known for their role in nitrogen fixation, which enhances soil fertility and plant growth. However, it is important to consider the health effects associated with MAG TPA_asm: Rhizobium sp. This bacterium is linked to several plant diseases, including tumor formation, crown gall, and hairy root diseases. These conditions can adversely affect the health of host plants, potentially leading to reduced agricultural yields. The presence of this Rhizobium in the rhizosphere indicates its ecological role in influencing plant health and soil dynamics. Understanding its interactions with both beneficial and pathogenic outcomes offers insights into the complexities of microbial ecology and plant-microbe associations in natural soil environments. Further research into this organism's specific mechanisms can reveal its dual nature, contributing both positively to plant growth and negatively to plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of MAG TPA_asm: Rhizobium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature28
Temperature rangeNot Available
HabitatBorj cedria soil; rhizosphere
Biotic relationshipNot Available
Host(s)Vicia faba, Chlamydomonas reinhardtii, Chlorella vulgaris
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Rhizobium sp. isolate UBA11406 contig_4919, whole

Gene Summary

Adenine Count

924860 bp

Thymine Count

928312 bp

Guanine Count

1472885 bp

Cytosine Count

1476731 bp

Genome Length

4808122 bp

Protein-coding Genes

4607 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseDIC56_21145Not AvailablePositive4228773 - 422958227322.0
flavin reductaseDIC56_21150Not AvailableNegative4229614 - 423014419392.4
hypothetical proteinDIC56_21155Not AvailableNegative4230122 - 423075724724.8
hypothetical proteinDIC56_21160Not AvailableNegative4230880 - 423179133360.8
class ii glutamine amidotransferaseDIC56_21165Not AvailablePositive4232040 - 423285530064.6
hypothetical proteinDIC56_21170Not AvailableNegative4232865 - 423321812951.7
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcDIC56_21175Not AvailableNegative4233215 - 423443543174.2
2-polyprenylphenol 6-hydroxylaseDIC56_21180Not AvailableNegative4234556 - 423613058257.8
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieDIC56_21185Not AvailableNegative4236193 - 423696928711.4
dna-formamidopyrimidine glycosylaseDIC56_21190Not AvailablePositive4237117 - 423800732490.1

Displaying genes 4091 – 4100 of 4672 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Crown gallCausesPMC12602688
TumorsCausesPMC12602688
Hairy root diseasesCausesPMC12602688

Displaying health effects 1 – 3 of 3 in total