Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Rhizobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Rhizobium |
| Species | Rhizobium sp. |
| Strain | MAG TPA_asm: |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 28 |
| Temperature range | Not Available |
| Habitat | Borj cedria soil; rhizosphere |
| Biotic relationship | Not Available |
| Host(s) | Vicia faba, Chlamydomonas reinhardtii, Chlorella vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
924860 bp
Thymine Count
928312 bp
Guanine Count
1472885 bp
Cytosine Count
1476731 bp
Genome Length
4808122 bp
Protein-coding Genes
4607 genes
Non-Coding Genes
65 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-carboxy-cis,cis-muconate cycloisomerase | DIC56_09030 | Not Available | Negative | 1817694 - 1818752 | 37358.1 |
| 3-oxoadipyl-coa thiolase | DIC56_09035 | Not Available | Negative | 1818756 - 1819958 | 41832.4 |
| 3-oxoacid coa-transferase | DIC56_09040 | Not Available | Negative | 1819963 - 1820658 | 24694.8 |
| 3-oxoadipate coa-transferase | DIC56_09045 | Not Available | Negative | 1820655 - 1821362 | 24782.9 |
| protocatechuate 3,4-dioxygenase subunit alpha | DIC56_09050 | Not Available | Negative | 1821457 - 1822074 | 22777.1 |
| protocatechuate 3,4-dioxygenase subunit beta | DIC56_09055 | Not Available | Negative | 1822076 - 1822816 | 28013.5 |
| 4-carboxymuconolactone decarboxylase | DIC56_09060 | Not Available | Negative | 1822813 - 1823229 | 15400.2 |
| 3-oxoadipate enol-lactonase | DIC56_09065 | Not Available | Negative | 1823240 - 1824028 | 28581.4 |
| pca operon transcription factor pcaq | DIC56_09070 | Not Available | Positive | 1824121 - 1825044 | 33234.3 |
| dna polymerase i | DIC56_09075 | Not Available | Negative | 1825061 - 1828039 | 108298.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Crown gall | Causes | PMC12602688 |
| Tumors | Causes | PMC12602688 |
| Hairy root diseases | Causes | PMC12602688 |
