Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Porphyromonadaceae |
| Genus | /taxonomy?family=Porphyromonadaceae&kingdom=Pseudomonadati&klass=Bacteroidia&level=genus&order=Bacteroidales&phylum=Bacteroidota |
| Species | Porphyromonadaceae bacterium |
| Strain | MAG TPA_asm: |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
MAG TPA_asm: Porphyromonadaceae bacterium isolate UBA12083
Gene Summary
Adenine Count
937810 bp
Thymine Count
921633 bp
Guanine Count
810309 bp
Cytosine Count
811237 bp
Genome Length
3480997 bp
Protein-coding Genes
2678 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DEP83_03545 | Not Available | Positive | 881381 - 884860 | 129414.0 |
| ragb/susd family nutrient uptake outer membrane protein | DEP83_03550 | Not Available | Positive | 884897 - 887179 | 85850.0 |
| polysaccharide lyase | DEP83_03555 | Not Available | Positive | 887322 - 889013 | 62391.6 |
| polysaccharide lyase | DEP83_03560 | Not Available | Positive | 889028 - 890731 | 63191.9 |
| hypothetical protein | DEP83_03565 | Not Available | Positive | 890768 - 891436 | 25900.5 |
| dna starvation/stationary phase protection protein | DEP83_03570 | Not Available | Positive | 891549 - 892022 | 17790.3 |
| hypothetical protein | DEP83_03575 | Not Available | Negative | 892133 - 893476 | 48818.1 |
| thioredoxin family protein | DEP83_03580 | Not Available | Negative | 893551 - 893784 | 8368.57 |
| transcriptional regulator | DEP83_03590 | Not Available | Negative | 894715 - 895035 | 12094.7 |
| dna-binding response regulator | DEP83_03595 | Not Available | Negative | 895183 - 895896 | 27669.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
