MAG TPA_asm: Porphyromonadaceae bacterium

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Description

MAG TPA_asm is a member of the family Porphyromonadaceae, characterized by its complex genomic structure, which consists of five replicons. This bacterium has been cataloged under several GenBank accessions, including DNRU00000000.1, DOLW00000000.1, DORM00000000.1, DOYI00000000.1, and DOYP00000000.1. The presence of multiple replicons may suggest a level of genomic diversity and adaptability, which could be advantageous for survival in varying environmental conditions. Members of the Porphyromonadaceae family are generally known for their role in the degradation of complex organic materials and are often found in diverse habitats, including soil and the gastrointestinal tracts of animals. This ecological versatility could position MAG TPA_asm as a key player in nutrient cycling, contributing to the breakdown of organic matter and influencing microbial community dynamics within its ecosystem. The ability to inhabit varied environments may also reflect evolutionary adaptations, allowing MAG TPA_asm to thrive under different metabolic conditions. Understanding the specific roles and interactions of this bacterium within its ecological niche can provide insights into microbial ecology and the functional capabilities of the Porphyromonadaceae family, particularly in nutrient cycling and organic matter decomposition.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Porphyromonadaceae bacterium isolate UBA12083

Gene Summary

Adenine Count

937810 bp

Thymine Count

921633 bp

Guanine Count

810309 bp

Cytosine Count

811237 bp

Genome Length

3480997 bp

Protein-coding Genes

2678 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3098 domain-containing proteinDEP83_00120Not AvailablePositive23486 - 237318764.18
udp-diphosphataseDEP83_00125Not AvailablePositive23768 - 2464932404.9
trna pseudouridine(55) synthase trubDEP83_00130Not AvailablePositive24655 - 2535026100.0
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaDEP83_00135Not AvailablePositive25347 - 2639940620.8
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseDEP83_00140Not AvailablePositive26404 - 2689218245.0
phospholipaseDEP83_00145Not AvailablePositive26991 - 2786032435.4
alpha-amylaseDEP83_00150Not AvailablePositive27872 - 2956664840.4
ribose-phosphate pyrophosphokinaseDEP83_00155Not AvailablePositive29678 - 3061334247.6
duf4332 domain-containing proteinDEP83_00160Not AvailablePositive30808 - 3121514902.9
phosphotyrosine protein phosphataseDEP83_00165Not AvailableNegative31265 - 3177419488.9

Displaying genes 31 – 40 of 13922 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.