MAG TPA_asm: Runella sp.

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

MAG TPA_asm, identified as a member of the genus Runella, is characterized as a Gram-negative bacterium with a bacilli shape. This classification indicates that it possesses a thin peptidoglycan layer and an outer membrane, typical of Gram-negative organisms. The strain is notable for having a single replicon, which suggests a streamlined genetic organization that may influence its replication and metabolic processes. The accession number for this strain is DMIU00000000.1, which allows for its identification and retrieval from genomic databases for further research and analysis. The genomic data associated with this accession can provide insights into its genetic makeup, potential metabolic pathways, and ecological roles. The ecological implications of Runella sp. are significant, as members of this genus are often found in various environments, including soil and aquatic habitats. Their presence can contribute to nutrient cycling and the degradation of organic materials. Given their Gram-negative nature and bacilli shape, it is likely that they play a role in interactions within microbial communities, potentially influencing the dynamics of microbial populations and their collective impact on ecosystem functions. In summary, MAG TPA_asm: Runella sp. exemplifies a Gram-negative, single-replicon bacillus with potential ecological importance, particularly in nutrient cycling and microbial community interactions within its native environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Runella sp. isolate UBA8721 contig_75595, whole

Gene Summary

Adenine Count

1783120 bp

Thymine Count

1789582 bp

Guanine Count

1450376 bp

Cytosine Count

1449784 bp

Genome Length

6480316 bp

Protein-coding Genes

5579 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
long-chain fatty acid--coa ligaseDCM71_28940Not AvailableNegative6399163 - 640065055071.8
succinyl-coa--3-ketoacid-coa transferaseDCM71_28945Not AvailableNegative6401016 - 640235946553.4
duf58 domain-containing proteinDCM71_28950Not AvailablePositive6402488 - 640335433419.1
hypothetical proteinDCM71_28955Not AvailablePositive6403514 - 640411022138.7
tonb-dependent receptorDCM71_28960Not AvailablePositive6404259 - 640671291626.1
putative toxin-antitoxin system toxin component, pin familyDCM71_28965Not AvailableNegative6406730 - 640714615971.2
hypothetical proteinDCM71_28970Not AvailableNegative6407143 - 64073999665.47
5'-methylthioadenosine/adenosylhomocysteine nucleosidaseDCM71_28980Not AvailablePositive6408906 - 640973930818.6
methylcrotonoyl-coa carboxylaseDCM71_28985Not AvailablePositive6409785 - 641141358833.7
hypothetical proteinDCM71_28990Not AvailablePositive6411433 - 641212527113.2

Displaying genes 5531 – 5540 of 5599 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.