MAG TPA_asm: Runella sp.

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

MAG TPA_asm, identified as a member of the genus Runella, is characterized as a Gram-negative bacterium with a bacilli shape. This classification indicates that it possesses a thin peptidoglycan layer and an outer membrane, typical of Gram-negative organisms. The strain is notable for having a single replicon, which suggests a streamlined genetic organization that may influence its replication and metabolic processes. The accession number for this strain is DMIU00000000.1, which allows for its identification and retrieval from genomic databases for further research and analysis. The genomic data associated with this accession can provide insights into its genetic makeup, potential metabolic pathways, and ecological roles. The ecological implications of Runella sp. are significant, as members of this genus are often found in various environments, including soil and aquatic habitats. Their presence can contribute to nutrient cycling and the degradation of organic materials. Given their Gram-negative nature and bacilli shape, it is likely that they play a role in interactions within microbial communities, potentially influencing the dynamics of microbial populations and their collective impact on ecosystem functions. In summary, MAG TPA_asm: Runella sp. exemplifies a Gram-negative, single-replicon bacillus with potential ecological importance, particularly in nutrient cycling and microbial community interactions within its native environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Runella sp. isolate UBA8721 contig_75595, whole

Gene Summary

Adenine Count

1783120 bp

Thymine Count

1789582 bp

Guanine Count

1450376 bp

Cytosine Count

1449784 bp

Genome Length

6480316 bp

Protein-coding Genes

5579 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4440 domain-containing proteinDCM71_22670Not AvailableNegative4991950 - 499240217147.7
2,5-diketo-d-gluconic acid reductaseDCM71_22675Not AvailableNegative4992542 - 499318825088.2
had family hydrolaseDCM71_22680Not AvailableNegative4993189 - 49934229157.09
hydrolaseDCM71_22685Not AvailableNegative4993454 - 499561982383.9
ureidoglycolate lyaseDCM71_22690Not AvailableNegative4995730 - 499652729214.6
hypothetical proteinDCM71_22695Not AvailablePositive4996528 - 499700418777.1
n-acetylmuramoyl-l-alanine amidaseDCM71_22700Not AvailableNegative4997024 - 499824146659.1
laci family transcriptional regulatorDCM71_22705Not AvailableNegative4998302 - 499933038680.4
hypothetical proteinDCM71_22710Not AvailablePositive4999371 - 49996079157.57
5-dehydro-4-deoxy-d-glucuronate isomeraseDCM71_22715Not AvailablePositive4999638 - 500046831032.9

Displaying genes 4331 – 4340 of 5599 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.