MAG TPA_asm: Runella sp.

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

MAG TPA_asm, identified as a member of the genus Runella, is characterized as a Gram-negative bacterium with a bacilli shape. This classification indicates that it possesses a thin peptidoglycan layer and an outer membrane, typical of Gram-negative organisms. The strain is notable for having a single replicon, which suggests a streamlined genetic organization that may influence its replication and metabolic processes. The accession number for this strain is DMIU00000000.1, which allows for its identification and retrieval from genomic databases for further research and analysis. The genomic data associated with this accession can provide insights into its genetic makeup, potential metabolic pathways, and ecological roles. The ecological implications of Runella sp. are significant, as members of this genus are often found in various environments, including soil and aquatic habitats. Their presence can contribute to nutrient cycling and the degradation of organic materials. Given their Gram-negative nature and bacilli shape, it is likely that they play a role in interactions within microbial communities, potentially influencing the dynamics of microbial populations and their collective impact on ecosystem functions. In summary, MAG TPA_asm: Runella sp. exemplifies a Gram-negative, single-replicon bacillus with potential ecological importance, particularly in nutrient cycling and microbial community interactions within its native environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Runella sp. isolate UBA8721 contig_75595, whole

Gene Summary

Adenine Count

1783120 bp

Thymine Count

1789582 bp

Guanine Count

1450376 bp

Cytosine Count

1449784 bp

Genome Length

6480316 bp

Protein-coding Genes

5579 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseDCM71_20535Not AvailableNegative4535721 - 453720154941.4
oxidoreductaseDCM71_20540Not AvailableNegative4537202 - 453831642221.7
methyltransferase type 11DCM71_20545Not AvailablePositive4538438 - 453908824539.9
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthaseDCM71_20550Not AvailableNegative4539090 - 454086267102.9
asnc family transcriptional regulatorDCM71_20555Not AvailableNegative4540859 - 454132017580.5
dienelactone hydrolaseDCM71_20560Not AvailablePositive4541527 - 45417006432.58
cusa/czca family heavy metal efflux rnd transporterDCM71_20565Not AvailableNegative4541825 - 4544938113574.0
efflux rnd transporter periplasmic adaptor subunitDCM71_20570Not AvailableNegative4544942 - 454602440367.3
tolc family proteinDCM71_20575Not AvailableNegative4546044 - 454732448059.4
hypothetical proteinDCM71_20580Not AvailablePositive4547510 - 454782412035.7

Displaying genes 3921 – 3930 of 5599 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.