MAG TPA_asm: Runella sp.

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

MAG TPA_asm, identified as a member of the genus Runella, is characterized as a Gram-negative bacterium with a bacilli shape. This classification indicates that it possesses a thin peptidoglycan layer and an outer membrane, typical of Gram-negative organisms. The strain is notable for having a single replicon, which suggests a streamlined genetic organization that may influence its replication and metabolic processes. The accession number for this strain is DMIU00000000.1, which allows for its identification and retrieval from genomic databases for further research and analysis. The genomic data associated with this accession can provide insights into its genetic makeup, potential metabolic pathways, and ecological roles. The ecological implications of Runella sp. are significant, as members of this genus are often found in various environments, including soil and aquatic habitats. Their presence can contribute to nutrient cycling and the degradation of organic materials. Given their Gram-negative nature and bacilli shape, it is likely that they play a role in interactions within microbial communities, potentially influencing the dynamics of microbial populations and their collective impact on ecosystem functions. In summary, MAG TPA_asm: Runella sp. exemplifies a Gram-negative, single-replicon bacillus with potential ecological importance, particularly in nutrient cycling and microbial community interactions within its native environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Runella sp. isolate UBA8721 contig_75595, whole

Gene Summary

Adenine Count

1783120 bp

Thymine Count

1789582 bp

Guanine Count

1450376 bp

Cytosine Count

1449784 bp

Genome Length

6480316 bp

Protein-coding Genes

5579 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDCM71_14625Not AvailableNegative3175391 - 317590019109.8
5-dehydro-4-deoxy-d-glucuronate isomeraseDCM71_14630Not AvailablePositive3175946 - 317677631648.9
ribosome-associated translation inhibitor raiaDCM71_14635Not AvailablePositive3176964 - 317733814372.3
amidohydrolaseDCM71_14640Not AvailablePositive3177481 - 317909159987.6
phenylalanine--trna ligase subunit alphaDCM71_14645Not AvailablePositive3179138 - 318017839604.0
dna-formamidopyrimidine glycosylaseDCM71_14650Not AvailableNegative3180228 - 318058513723.5
atp-dependent helicaseDCM71_14655Not AvailablePositive3180734 - 318199947419.6
histidine kinaseDCM71_14660Not AvailableNegative3182693 - 31829288228.83
hypothetical proteinDCM71_14665Not AvailableNegative3182929 - 318334615940.8
duf4386 domain-containing proteinDCM71_14670Not AvailableNegative3183361 - 318406225896.4

Displaying genes 2801 – 2810 of 5599 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.