MAG TPA_asm: Runella sp.

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

MAG TPA_asm, identified as a member of the genus Runella, is characterized as a Gram-negative bacterium with a bacilli shape. This classification indicates that it possesses a thin peptidoglycan layer and an outer membrane, typical of Gram-negative organisms. The strain is notable for having a single replicon, which suggests a streamlined genetic organization that may influence its replication and metabolic processes. The accession number for this strain is DMIU00000000.1, which allows for its identification and retrieval from genomic databases for further research and analysis. The genomic data associated with this accession can provide insights into its genetic makeup, potential metabolic pathways, and ecological roles. The ecological implications of Runella sp. are significant, as members of this genus are often found in various environments, including soil and aquatic habitats. Their presence can contribute to nutrient cycling and the degradation of organic materials. Given their Gram-negative nature and bacilli shape, it is likely that they play a role in interactions within microbial communities, potentially influencing the dynamics of microbial populations and their collective impact on ecosystem functions. In summary, MAG TPA_asm: Runella sp. exemplifies a Gram-negative, single-replicon bacillus with potential ecological importance, particularly in nutrient cycling and microbial community interactions within its native environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Runella sp. isolate UBA8721 contig_75595, whole

Gene Summary

Adenine Count

1783120 bp

Thymine Count

1789582 bp

Guanine Count

1450376 bp

Cytosine Count

1449784 bp

Genome Length

6480316 bp

Protein-coding Genes

5579 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atpaseDCM71_13755Not AvailableNegative2965367 - 296628434877.4
amidohydrolaseDCM71_13760Not AvailableNegative2966389 - 296751943169.9
nucleotidyltransferase domain-containing proteinDCM71_13765Not AvailableNegative2967623 - 296794612404.9
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseDCM71_13770Not AvailableNegative2967961 - 296843717483.2
peptidase m16DCM71_13775Not AvailableNegative2968446 - 296968446484.2
hypothetical proteinDCM71_13780Not AvailablePositive2969829 - 297095643703.8
hypothetical proteinDCM71_13785Not AvailableNegative2970960 - 297151720520.6
gluconokinaseDCM71_13790Not AvailableNegative2971589 - 297310355605.5
arac family transcriptional regulatorDCM71_13795Not AvailableNegative2973133 - 297400833903.0
molecular chaperone htpgDCM71_13800Not AvailableNegative2974499 - 297479110943.2

Displaying genes 2631 – 2640 of 5599 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.