MAG TPA_asm: Sphingobacterium sp.

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

MAG TPA_asm, identified as Sphingobacterium sp., is a rod-shaped bacterium notable for its dual replicon structure, featuring two distinct replicons. This characteristic may suggest a certain level of genomic flexibility, which can be advantageous in various ecological niches. Sphingobacterium species are generally recognized for their role in the degradation of complex organic materials, particularly in soil and aquatic environments. Their rod shape is typical for this genus and might facilitate mobility and interaction with their surroundings, allowing them to efficiently exploit available resources. The accessions DMBY00000000.1 and DMMC00000000.1 provide genomic sequences that can be utilized for further studies on genetic diversity and metabolic pathways within this species. Understanding these genetic underpinnings may enhance our knowledge of the ecological roles that Sphingobacterium sp. plays, particularly in biogeochemical cycles, such as carbon cycling, where they may contribute to the breakdown of organic matter. In summary, the rod-shaped Sphingobacterium sp. MAG TPA_asm, with its unique genomic structure, presents an interesting subject for further research into its ecological functions and contributions to organic matter degradation in various environments. The dual replicon nature may offer insights into its adaptability and metabolic capabilities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of MAG TPA_asm: Sphingobacterium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangepsychrotolerant
HabitatArtic soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Sphingobacterium sp. isolate UBA11251 contig_16713,

Gene Summary

Adenine Count

1667625 bp

Thymine Count

1667242 bp

Guanine Count

1092691 bp

Cytosine Count

1105232 bp

Genome Length

5533985 bp

Protein-coding Genes

4892 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad-dependent epimeraseDCG88_08890Not AvailableNegative1947923 - 194887035628.6
aspartate-semialdehyde dehydrogenaseDCG88_08895Not AvailablePositive1949448 - 195043735863.2
peptide deformylaseDCG88_08900Not AvailableNegative1950561 - 195178746541.4
holliday junction resolvase ruvxDCG88_08905Not AvailablePositive1952108 - 195252115347.5
rrna maturation rnase ybeyDCG88_08910Not AvailablePositive1952570 - 195299816551.7
nucleoside-diphosphate kinaseDCG88_08915Not AvailableNegative1953138 - 195355715111.9
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseDCG88_08920Not AvailablePositive1953843 - 195469131375.3
ferrochelataseDCG88_08925Not AvailablePositive1954773 - 195580739104.1
metallophosphataseDCG88_08930Not AvailablePositive1955820 - 195709447921.6
udp-glucose--hexose-1-phosphate uridylyltransferaseDCG88_08935Not AvailablePositive1957163 - 195821240663.1

Displaying genes 1711 – 1720 of 9230 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.