MAG TPA_asm: Sphingobacterium sp.

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

MAG TPA_asm, identified as Sphingobacterium sp., is a rod-shaped bacterium notable for its dual replicon structure, featuring two distinct replicons. This characteristic may suggest a certain level of genomic flexibility, which can be advantageous in various ecological niches. Sphingobacterium species are generally recognized for their role in the degradation of complex organic materials, particularly in soil and aquatic environments. Their rod shape is typical for this genus and might facilitate mobility and interaction with their surroundings, allowing them to efficiently exploit available resources. The accessions DMBY00000000.1 and DMMC00000000.1 provide genomic sequences that can be utilized for further studies on genetic diversity and metabolic pathways within this species. Understanding these genetic underpinnings may enhance our knowledge of the ecological roles that Sphingobacterium sp. plays, particularly in biogeochemical cycles, such as carbon cycling, where they may contribute to the breakdown of organic matter. In summary, the rod-shaped Sphingobacterium sp. MAG TPA_asm, with its unique genomic structure, presents an interesting subject for further research into its ecological functions and contributions to organic matter degradation in various environments. The dual replicon nature may offer insights into its adaptability and metabolic capabilities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of MAG TPA_asm: Sphingobacterium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangepsychrotolerant
HabitatArtic soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Sphingobacterium sp. isolate UBA11251 contig_16713,

Gene Summary

Adenine Count

1667625 bp

Thymine Count

1667242 bp

Guanine Count

1092691 bp

Cytosine Count

1105232 bp

Genome Length

5533985 bp

Protein-coding Genes

4892 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDCG88_08575Not AvailableNegative1876040 - 187633311124.2
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase purhDCG88_08580Not AvailableNegative1876388 - 187675813569.3
uridine kinaseDCG88_08585Not AvailableNegative1876881 - 187751924948.5
lysm peptidoglycan-binding domain-containing proteinDCG88_08590Not AvailableNegative1877552 - 187847533647.4
hypothetical proteinDCG88_08595Not AvailableNegative1878487 - 187924229379.7
hypothetical proteinDCG88_08600Not AvailableNegative1879359 - 188095159025.2
cycloisomaltooligosaccharide glucanotransferaseDCG88_08610Not AvailableNegative1881261 - 188172117725.1
susf/suse family outer membrane proteinDCG88_08615Not AvailableNegative1881802 - 188326554196.0
ragb/susd family nutrient uptake outer membrane proteinDCG88_08620Not AvailableNegative1883305 - 188479255240.9
tonb-dependent receptorDCG88_08625Not AvailableNegative1884811 - 1887804110844.0

Displaying genes 1651 – 1660 of 9230 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.