MAG TPA_asm: Sphingobacterium sp.

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

MAG TPA_asm, identified as Sphingobacterium sp., is a rod-shaped bacterium notable for its dual replicon structure, featuring two distinct replicons. This characteristic may suggest a certain level of genomic flexibility, which can be advantageous in various ecological niches. Sphingobacterium species are generally recognized for their role in the degradation of complex organic materials, particularly in soil and aquatic environments. Their rod shape is typical for this genus and might facilitate mobility and interaction with their surroundings, allowing them to efficiently exploit available resources. The accessions DMBY00000000.1 and DMMC00000000.1 provide genomic sequences that can be utilized for further studies on genetic diversity and metabolic pathways within this species. Understanding these genetic underpinnings may enhance our knowledge of the ecological roles that Sphingobacterium sp. plays, particularly in biogeochemical cycles, such as carbon cycling, where they may contribute to the breakdown of organic matter. In summary, the rod-shaped Sphingobacterium sp. MAG TPA_asm, with its unique genomic structure, presents an interesting subject for further research into its ecological functions and contributions to organic matter degradation in various environments. The dual replicon nature may offer insights into its adaptability and metabolic capabilities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of MAG TPA_asm: Sphingobacterium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangepsychrotolerant
HabitatArtic soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Sphingobacterium sp. isolate UBA11251 contig_16713,

Gene Summary

Adenine Count

1667625 bp

Thymine Count

1667242 bp

Guanine Count

1092691 bp

Cytosine Count

1105232 bp

Genome Length

5533985 bp

Protein-coding Genes

4892 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class ib ribonucleoside-diphosphate reductase assembly flavoprotein nrdiDCG88_06455Not AvailablePositive1429699 - 143004412814.2
class 1b ribonucleoside-diphosphate reductase subunit alphaDCG88_06460Not AvailablePositive1430004 - 143210980687.7
class 1b ribonucleoside-diphosphate reductase subunit betaDCG88_06465Not AvailablePositive1432242 - 143322837985.4
alkaline phosphataseDCG88_06470Not AvailableNegative1433433 - 143371710231.1
alpha-1,6-mannanaseDCG88_06475Not AvailableNegative1433850 - 143501645191.6
ragb/susd family nutrient uptake outer membrane proteinDCG88_06480Not AvailableNegative1435072 - 143670361587.7
susc/raga family tonb-linked outer membrane proteinDCG88_06485Not AvailableNegative1436716 - 1439760113067.0
hypothetical proteinDCG88_06490Not AvailablePositive1440070 - 144093931959.0
tonb-dependent receptorDCG88_06495Not AvailablePositive1440945 - 144293374633.0
hypothetical proteinDCG88_06500Not AvailablePositive1442957 - 144380530483.0

Displaying genes 1251 – 1260 of 9230 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.