[Ruminococcus] torques strain 2789STDY5834841

Gram-positiveCocciAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Mediterraneibacter

Description

[Ruminococcus] torques strain 2789STDY5834841 is a Gram-positive anaerobic coccus, characterized by its spherical shape. This strain belongs to a genus known for its role in the fermentation of complex carbohydrates, which suggests its involvement in the digestive processes of various hosts, particularly in the gastrointestinal tract of ruminants and humans. As an anaerobe, [Ruminococcus] torques strain 2789STDY5834841 thrives in environments devoid of oxygen, which aligns with its ecological niche in the gut microbiome where oxygen levels are low. The coccoid morphology of this strain may facilitate its ability to form biofilms or clusters, potentially enhancing its stability and functionality within the anaerobic gut ecosystem. The metabolic pathways utilized by [Ruminococcus] torques strains often include the fermentation of polysaccharides, which can lead to the production of short-chain fatty acids, important metabolites that serve as energy sources for host cells and play a role in maintaining gut health. Given its anaerobic nature and coccal shape, [Ruminococcus] torques strain 2789STDY5834841 may contribute to the complex interactions within the gut microbiota, influencing not only digestion but also the overall metabolic health of the host. This strain exemplifies the intricate balance of microbial communities in the gut, where anaerobic bacteria like [Ruminococcus] torques are essential for the effective breakdown of dietary fibers and the maintenance of a healthy gut environment.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusMediterraneibacter
SpeciesMediterraneibacter torques
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Ruminococcus] torques strain 2789STDY5834841


Gene Summary

Adenine Count

862323 bp

Thymine Count

879484 bp

Guanine Count

619368 bp

Cytosine Count

640374 bp

Genome Length

3004151 bp

Protein-coding Genes

2636 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail tape measure proteinERS852456_01258E7DNB6-1438793 - 1442533129305.0
uncharacterised proteinERS852456_01259Not Available-1442650 - 144362736107.1
Hypothetical proteinERS852456_01260Not Available-1443717 - 144432523878.7
uncharacterised proteinERS852456_01261Not Available-1444322 - 144467213364.0
Hypothetical proteinERS852456_01262Not Available-1444706 - 144526019783.9
Tail completion proteinERS852456_01263Not Available-1445265 - 144569616622.6
Hypothetical proteinERS852456_01264Not Available-1445693 - 144602512716.3
uncharacterised proteinERS852456_01265Not Available-1446025 - 144643214989.8
uncharacterised proteinERS852456_01266Not Available-1446432 - 144680314217.8
Main capsid proteinERS852456_01267Not Available-1446818 - 144767530728.6

Displaying genes 1 – 10 of 2729 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

147 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000837dimethylmaleateC6H6O4Chemical structure of dimethylmaleateNot available
Average142.111Da
Monoisotopic142.027705833Da
BASm00009123-(indol-3-yl)lactateC11H10NO3Chemical structure of 3-(indol-3-yl)lactateNot available
Average204.206Da
Monoisotopic204.0666168Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da

Displaying 1–10 of 147 metabolites