Ruegeria sp. CECT 5091

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. CECT 5091 is a marine bacterium characterized by having a single replicon. This trait suggests a streamlined genomic organization, which can be advantageous for efficient replication and adaptation in its aquatic environment. The bacterium is cataloged under the accession number CYUD00000000.1, indicating that its genomic information is available for further scientific study and analysis. Ruegeria species are known for their ecological roles, particularly in marine environments. They are often associated with phytoplankton and play a significant role in the nutrient cycling processes, particularly in the ocean's carbon and nitrogen cycles. This specific strain, CECT 5091, likely contributes to these ecological functions, although detailed insights into its specific interactions and roles within marine ecosystems require further research. Understanding the traits of Ruegeria sp. CECT 5091 can provide valuable insights into its potential applications in biotechnology and environmental management, particularly in the context of marine microbiology. The study of this bacterium may reveal more about its capabilities in nutrient cycling and its interactions with other marine organisms, which are crucial for maintaining the health of marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria denitrificans
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria sp. CECT 5091 genome assembly

Gene Summary

Adenine Count

999559 bp

Thymine Count

999396 bp

Guanine Count

1314219 bp

Cytosine Count

1306946 bp

Genome Length

4620120 bp

Protein-coding Genes

4525 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phage gp6-like head-tail connector proteinRUE5091_00828Not AvailableNegative824951 - 82555021099.1
Phage major capsid proteinRUE5091_00829Not AvailableNegative825729 - 82697344396.3
Putative prohead proteaseRUE5091_00830P49860Negative826942 - 82748720055.0
hypothetical proteinRUE5091_00831Not AvailableNegative827514 - 8277328196.02
Portal proteinRUE5091_00832Q1RIH4Negative827725 - 82889742527.4
cation diffusion facilitator family transporterRUE5091_00833Not AvailablePositive828989 - 83008939861.9
Terminase large subunitRUE5091_00834Not AvailableNegative830153 - 83156850973.5
Minor spike proteinRUE5091_04561P03646Positive4585749 - 458668433032.5
Dna replication initiation protein gpaRUE5091_04562P03631Positive4586748 - 458828958721.8
CRUE5091_04563P69172Positive4588286 - 458854610081.0

Displaying genes 11 – 20 of 4591 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

335 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 335 metabolites

Health Effects

No health effects information available for this bacterium.