Tropicibacter naphthalenivorans

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicibacter

Description

Tropicibacter naphthalenivorans is a Gram-negative, aerobic bacterium characterized by its rod shape. It thrives optimally at a temperature of 37°C and is classified as mesophilic, indicating that it grows best in moderate temperature conditions. This bacterium possesses a single replicon, which is a feature relevant to its genetic structure. The ability of Tropicibacter naphthalenivorans to degrade naphthalene suggests its potential role in bioremediation processes, particularly in environments contaminated with polycyclic aromatic hydrocarbons (PAHs). The organism's aerobic metabolism likely enables it to utilize naphthalene as a carbon source, highlighting its ecological significance in the breakdown of complex organic pollutants in diverse environments. The genomic data, available under the accession CYSE00000000.1, supports further research into its metabolic pathways and environmental applications. In summary, Tropicibacter naphthalenivorans exemplifies how specific microbial traits can confer ecological advantages, particularly in the degradation of environmental pollutants, which is essential for maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicibacter
SpeciesTropicibacter naphthalenivorans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicibacter naphthalenivorans


Gene Summary

Adenine Count

817496 bp

Thymine Count

824188 bp

Guanine Count

1422123 bp

Cytosine Count

1395383 bp

Genome Length

4459382 bp

Protein-coding Genes

4187 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Large packaging proteinTRN7648_02855Not AvailablePositive2952082 - 295336246325.6
Portal proteinTRN7648_02856Q1RIH4Positive2953544 - 295473743078.2
hypothetical proteinTRN7648_02857Not AvailablePositive2954730 - 29549578545.56
Putative prohead proteaseTRN7648_02858P49860Positive2954972 - 295551419671.4
Phage major capsid proteinTRN7648_02859Not AvailablePositive2955573 - 295682344218.2
phage gp6-like head-tail connector proteinTRN7648_02860Not AvailablePositive2956977 - 295757021144.6
bacteriophage head-tail adaptorTRN7648_02861Not AvailablePositive2957567 - 295790512110.3
hypothetical proteinTRN7648_02862Not AvailablePositive2957902 - 295831814190.7
Gene transfer aget (gta) orfg9-like phage major tail proteinTRN7648_02863Not AvailablePositive2958344 - 295876614701.1
hypothetical proteinTRN7648_02864Not AvailablePositive2958766 - 295909811517.9

Displaying genes 1 – 10 of 4261 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

319 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 319 metabolites

Health Effects

No health effects information available for this bacterium.