Nereida ignava

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Nereida

Description

Nereida ignava is a Gram-negative, aerobic bacterium characterized by its rod shape and psychrotolerant nature. This organism has a single replicon and is non-motile, indicating that it does not possess flagella or other structures for movement. N. ignava thrives optimally at a temperature of 16°C, which aligns with its classification as psychrotolerant, allowing it to grow in cooler environments. The ability of N. ignava to tolerate low temperatures is particularly significant in ecological contexts, as it suggests a potential role in nutrient cycling in cold marine ecosystems. Understanding the growth requirements and characteristics of such microorganisms can provide insights into their ecological niches and contributions to the overall health of marine environments. The accession number for N. ignava is CVQV00000000.1, which can be referenced for further genomic information.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusNereida
SpeciesNereida ignava
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nereida ignava genome assembly N.ignavaCECT5292_PROKKA, contig

Gene Summary

Adenine Count

659269 bp

Thymine Count

668898 bp

Guanine Count

785549 bp

Cytosine Count

774604 bp

Genome Length

2888349 bp

Protein-coding Genes

2834 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp synthase subunit betaNIG5292_02068A8LJR4Positive2071977 - 207340150340.8
f-atpase epsilon subunitNIG5292_02069Q162T0Positive2073405 - 207381213754.2
h-type lectin domain proteinNIG5292_02070P05450Positive2073937 - 207428713454.8
ribose-phosphate pyrophosphokinaseNIG5292_02071B9KPJ0Negative2074651 - 207566736801.6
2-hydroxychromene-2-carboxylate isomeraseNIG5292_02072Not AvailablePositive2075777 - 207637621485.4
low specificity l-threonine aldolaseNIG5292_02073O50584Negative2076497 - 207755237801.7
hypothetical proteinNIG5292_02074O68068Negative2077671 - 207810816473.4
riboflavin biosynthesis protein ribfNIG5292_02075P22990Negative2078101 - 207903933737.4
(r)-specific enoyl-coa hydrataseNIG5292_02076Q2RQ36Negative2079079 - 207952216190.6
ump phosphataseNIG5292_02077Not AvailableNegative2079612 - 208048431235.2

Displaying genes 2131 – 2140 of 2928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

174 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 174 metabolites

Health Effects

No health effects information available for this bacterium.