Nereida ignava

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Nereida

Description

Nereida ignava is a Gram-negative, aerobic bacterium characterized by its rod shape and psychrotolerant nature. This organism has a single replicon and is non-motile, indicating that it does not possess flagella or other structures for movement. N. ignava thrives optimally at a temperature of 16°C, which aligns with its classification as psychrotolerant, allowing it to grow in cooler environments. The ability of N. ignava to tolerate low temperatures is particularly significant in ecological contexts, as it suggests a potential role in nutrient cycling in cold marine ecosystems. Understanding the growth requirements and characteristics of such microorganisms can provide insights into their ecological niches and contributions to the overall health of marine environments. The accession number for N. ignava is CVQV00000000.1, which can be referenced for further genomic information.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusNereida
SpeciesNereida ignava
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nereida ignava genome assembly N.ignavaCECT5292_PROKKA, contig

Gene Summary

Adenine Count

659269 bp

Thymine Count

668898 bp

Guanine Count

785549 bp

Cytosine Count

774604 bp

Genome Length

2888349 bp

Protein-coding Genes

2834 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-arabonate dehydrataseNIG5292_01538Q92RP0Negative1522165 - 152388061044.4
alpha-galactosidaseNIG5292_01539P16551Negative1523877 - 152595578267.4
l-arabinose transport system permease protein araqNIG5292_01540Q55473Negative1525957 - 152680531519.2
l-arabinose transport system permease protein arapNIG5292_01541Not AvailableNegative1526805 - 152773135006.0
multiple sugar-binding protein precursorNIG5292_01542Not AvailableNegative1527871 - 152913646782.9
transcriptional regulator kdgrNIG5292_01543Q52154Positive1529282 - 153007028690.4
sn-glycerol-3-phosphate import atp-binding protein ugpcNIG5292_01544Q01937Positive1530086 - 153114138320.0
putative ester cyclaseNIG5292_01545Not AvailableNegative1531207 - 153217835721.2
sn-glycerol-3-phosphate import atp-binding protein ugpcNIG5292_01546Q8UII7Positive1532301 - 153335037920.8
putative abc transporter-binding protein precursorNIG5292_01547Not AvailablePositive1533436 - 153468943927.9

Displaying genes 1601 – 1610 of 2928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

174 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 174 metabolites

Health Effects

No health effects information available for this bacterium.