Nereida ignava

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Nereida

Description

Nereida ignava is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 16.0°C. This microbe is characterized by its unique cellular morphology and specific growth conditions, which suggest adaptations to cooler aquatic habitats. The Gram-negative nature of N. ignava indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature common to many environmental bacteria that may confer advantages such as resistance to certain antimicrobial agents. The optimal growth temperature of 16.0°C suggests that N. ignava is well-suited for life in temperate or polar marine ecosystems, where temperatures often fluctuate within this range. Its aerobic requirement implies that this bacterium relies on oxygen for respiration, which could influence its distribution within stratified water columns where oxygen availability varies. Nereida ignava may play a role in the cycling of nutrients in its environment, particularly in low-temperature aquatic ecosystems. By participating in the degradation of organic matter, it could contribute to the overall health and stability of these ecosystems. Understanding the specific interactions and contributions of N. ignava within its habitat may provide insights into microbial dynamics in cold-water environments, highlighting the importance of such organisms in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusNereida
SpeciesNereida ignava
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nereida ignava


Gene Summary

Adenine Count

659269 bp

Thymine Count

668898 bp

Guanine Count

785549 bp

Cytosine Count

774604 bp

Genome Length

2888349 bp

Protein-coding Genes

2834 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Beta-ketoacyl-acp synthase iNIG5292_00126P56902+126380 - 12763643583.7
putative aminodeoxychorismate lyaseNIG5292_00127P44720+127640 - 12879441476.1
Terminase large subunitNIG5292_00128Not Available+129266 - 12981419832.5
Terminase large subunitNIG5292_00129Not Available+129860 - 13069330437.5
Portal proteinNIG5292_00130Q1RIH4+130790 - 13194741365.1
hypothetical proteinNIG5292_00131Not Available+131940 - 1321859190.29
Putative prohead proteaseNIG5292_00132Not Available+132197 - 13274519266.1
Major capsid protein precursorNIG5292_00133Not Available+132792 - 13399443051.6
hypothetical proteinNIG5292_00134Not Available-133919 - 1341648722.58
phage gp6-like head-tail connector proteinNIG5292_00135Not Available+134174 - 13474920563.6

Displaying genes 1 – 10 of 2928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

174 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 174 metabolites