Yersinia similis strain R819

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia similis strain R819 is characterized as a rod-shaped bacterium that possesses flagella, indicating its potential motility. This trait may enhance its ability to colonize various environments or hosts. The strain is noted for having a single replicon, which suggests a streamlined genomic structure that could influence its replication and survival strategies. The genomic sequence of Yersinia similis strain R819 is cataloged under the accession number CPZI00000000.1, providing a reference for further genomic studies and comparisons within the Yersinia genus. This accession facilitates research into its genetic makeup, potentially contributing to the understanding of its pathogenicity, ecological interactions, and evolutionary relationships with other Yersinia species. In terms of biological or ecological insights, the presence of flagella in Yersinia similis strain R819 suggests that it may engage in active movement within its environment, which could be critical for its survival and adaptation. This motility may play a significant role in its interactions with other microorganisms, host organisms, or environmental niches, allowing it to exploit resources or evade immune responses. Understanding the ecological implications of motility in Yersinia similis could provide insights into its ecological role and potential impact on health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia similis
Strainstrain R819

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia similis strain R819
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatenvironment
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia similis strain R819 genome assembly, contig:

Gene Summary

Adenine Count

1265381 bp

Thymine Count

1266405 bp

Guanine Count

1109185 bp

Cytosine Count

1125130 bp

Genome Length

4766117 bp

Protein-coding Genes

4079 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-cysteine desulfhydraseERS008566_00286Q8ZF73Negative324851 - 32584335163.6
flagella biosynthesis protein flizERS008566_00287P0A211Negative326230 - 32673920183.3
flagellar biosynthesis sigma factorERS008566_00288P52621Negative326932 - 32765427453.7
flagellinERS008566_00289Q08860Negative328002 - 32965155831.4
flagellar capping proteinERS008566_00290Q56827Positive329939 - 33133948855.1
flagellar protein flisERS008566_00291P26609Positive331350 - 33174814335.1
flagellar biosynthesis protein flitERS008566_00292A7FJ26Positive331759 - 33212113935.8
arac family transcriptional regulatorERS008566_00293Not AvailablePositive332423 - 33329832829.9
hamp domain-containing proteinERS008566_00294Q9KLR1Positive333652 - 336606112213.0
putative glycosidaseERS008566_00295Not AvailablePositive336648 - 33726222837.9

Displaying genes 411 – 420 of 4241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

274 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 274 metabolites

Health Effects

No health effects information available for this bacterium.