Yersinia nurmii

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia nurmii is an aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella, which may assist in motility. A notable feature of Y. nurmii is its genetic structure, comprising a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number CPYD00000000.1, which provides a reference for genomic studies and identification. The aerobic nature of Yersinia nurmii suggests that it thrives in environments with sufficient oxygen availability, which may influence its ecological niche. The presence of flagella implies that this bacterium has the capability for active movement, potentially allowing it to navigate towards favorable conditions or away from adverse environments. Understanding the traits of Yersinia nurmii contributes to the broader comprehension of the Yersinia genus, which includes other species known for their significance in human and animal health. The specific adaptations of Y. nurmii to aerobic conditions and motility mechanisms may play a role in its ecological interactions and potential pathogenicity, although further studies would be needed to elucidate these aspects. Overall, the traits of Yersinia nurmii highlight its adaptability to oxygen-rich environments and its potential ecological roles within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia nurmii
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia nurmii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia nurmii genome assembly 8016_2#91, scaffold

Gene Summary

Adenine Count

1068979 bp

Thymine Count

1073073 bp

Guanine Count

1008188 bp

Cytosine Count

992859 bp

Genome Length

4143134 bp

Protein-coding Genes

3585 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
c4-dicarboxylate transporter dcucERS137967_00354Q8FJZ8Negative383388 - 38474347164.0
putative assembly proteinERS137967_00355P28249Negative385022 - 38686667329.8
deoxycytidine triphosphate deaminaseERS137967_00356A7FJJ3Negative386907 - 38748821249.5
uridine kinaseERS137967_00357A1JTX4Negative387560 - 38820124525.9
putative atpaseERS137967_00358P0AF09Negative388455 - 38956740187.9
methionyl-trna synthetaseERS137967_00359A1JTX6Positive389783 - 39181075945.6
membrane proteinERS137967_00360Not AvailableNegative391924 - 39276932768.8
putative sugar abc transporterERS137967_00361Not AvailablePositive393334 - 39441038558.9
uncharacterized conserved proteinERS137967_00362Not AvailablePositive394426 - 39567946298.5
putative multidrug resistance proteinERS137967_00363P31126Positive395826 - 39705845171.7

Displaying genes 401 – 410 of 3710 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

240 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 240 metabolites

Health Effects

No health effects information available for this bacterium.