Yersinia nurmii

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia nurmii is an aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella, which may assist in motility. A notable feature of Y. nurmii is its genetic structure, comprising a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number CPYD00000000.1, which provides a reference for genomic studies and identification. The aerobic nature of Yersinia nurmii suggests that it thrives in environments with sufficient oxygen availability, which may influence its ecological niche. The presence of flagella implies that this bacterium has the capability for active movement, potentially allowing it to navigate towards favorable conditions or away from adverse environments. Understanding the traits of Yersinia nurmii contributes to the broader comprehension of the Yersinia genus, which includes other species known for their significance in human and animal health. The specific adaptations of Y. nurmii to aerobic conditions and motility mechanisms may play a role in its ecological interactions and potential pathogenicity, although further studies would be needed to elucidate these aspects. Overall, the traits of Yersinia nurmii highlight its adaptability to oxygen-rich environments and its potential ecological roles within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia nurmii
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia nurmii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia nurmii genome assembly 8016_2#91, scaffold

Gene Summary

Adenine Count

1068979 bp

Thymine Count

1073073 bp

Guanine Count

1008188 bp

Cytosine Count

992859 bp

Genome Length

4143134 bp

Protein-coding Genes

3585 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftsxERS137967_03150P0AC31Positive3499389 - 350034234675.5
rna polymerase factor sigma-32ERS137967_03151P50510Positive3500637 - 350149432832.1
putative regulatory proteinERS137967_03152P44509Positive3501736 - 350286342039.2
gntp family permeaseERS137967_03153Q57493Positive3503004 - 350426942597.8
putative glycerate kinaseERS137967_03154P44507Positive3504281 - 350542039219.2
putative acetyltransferaseERS137967_03155Q7CPJ9Negative3505417 - 350580915041.2
branched-chain amino acid-binding proteinERS137967_03156P04816Positive3506218 - 350733339746.7
branched-chain amino acid transporter permease subunit livhERS137967_03157P0A2J2Positive3507489 - 350841532841.2
leucine/isoleucine/valine transporter permease subunitERS137967_03158P22729Positive3508412 - 350969846685.8
leucine/isoleucine/valine transporter atp-binding subunitERS137967_03159P0A194Positive3509695 - 351046228194.5

Displaying genes 3131 – 3140 of 3710 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

240 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 240 metabolites

Health Effects

No health effects information available for this bacterium.