Streptomyces viridifaciens strain DSM 40239

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces viridifaciens strain DSM 40239 is a notable bacterium characterized by its presence of flagella, which facilitates motility. This strain is classified under the genus Streptomyces, known for its filamentous structure and capability to produce a wide range of secondary metabolites, including antibiotics. The genomic structure of S. viridifaciens DSM 40239 is defined by the presence of three replicons, indicating a complex genomic organization. The strain has been associated with three specific accession numbers: CP090841.1, CP090842.1, and CP090840.1, which represent its genomic DNA sequences deposited in public databases. This bacterium plays a significant role in soil ecosystems, contributing to the decomposition of organic matter and the cycling of nutrients. As a member of the Streptomyces genus, it is likely involved in producing bioactive compounds that can influence microbial communities in its environment. The flagella may enhance its adaptability and survival in diverse ecological niches by allowing it to navigate towards nutrient-rich areas or evade unfavorable conditions. Thus, S. viridifaciens DSM 40239 exemplifies the intricate relationships between microbial motility, genomic complexity, and ecological functionality.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces viridifaciens
Strainstrain DSM 40239

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Streptomyces viridifaciens strain DSM 40239
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Streptomyces viridifaciens strain DSM 40239 chromosome, complete

Gene Summary

Adenine Count

1077781 bp

Thymine Count

1077584 bp

Guanine Count

2879670 bp

Cytosine Count

2880611 bp

Genome Length

7915646 bp

Protein-coding Genes

6942 genes

Non-Coding Genes

117 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphatase pap2 family proteinBOQ63_011955Not AvailablePositive1028289 - 102913130241.1
proteinase inhibitor i78BOQ63_011960Not AvailableNegative1029152 - 10293557439.72
duf6343 family proteinBOQ63_011965Not AvailablePositive1029432 - 10297049747.98
aspartate aminotransferase family proteinBOQ63_011970Not AvailableNegative1029763 - 103116351541.3
1-deoxy-d-xylulose-5-phosphate synthaseBOQ63_011975Not AvailableNegative1031153 - 103306367605.0
adenosyl-hopene transferase hpnhBOQ63_011980Not AvailableNegative1033202 - 103423038914.0
1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductaseBOQ63_011985Not AvailableNegative1034233 - 103491323567.5
squalene--hopene cyclaseBOQ63_011990Not AvailableNegative1034910 - 103699176963.6
polyprenyl synthetase family proteinBOQ63_011995Not AvailableNegative1036999 - 103803035797.4
hydroxysqualene dehydroxylase hpneBOQ63_012000Not AvailableNegative1038285 - 103971849868.2

Displaying genes 931 – 940 of 8652 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.