Hyphomicrobium sp. GJ21

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium sp. GJ21 is characterized by the presence of flagella, which suggests a motile nature that may facilitate its movement in aquatic environments. It possesses a single replicon, indicating a streamlined genetic structure that could be advantageous for its adaptability and replication efficiency. The genome of Hyphomicrobium sp. GJ21 is cataloged under the accession number CDHO00000000.1, which provides a basis for further genomic studies and comparisons within the Hyphomicrobium genus. This species is part of a broader group of bacteria known for their roles in biogeochemical cycles, particularly in the transformation of carbon and nitrogen compounds. The motility conferred by flagella may allow Hyphomicrobium sp. GJ21 to exploit various ecological niches and respond to changes in nutrient availability or environmental conditions. The presence of a single replicon could also indicate a potential for rapid adaptation to fluctuating ecosystems, enhancing its survival and ecological interactions. In summary, Hyphomicrobium sp. GJ21's motility and genetic characteristics suggest it plays a significant role in its aquatic habitat, likely contributing to nutrient cycling and ecosystem dynamics. Its flagella may enhance its ecological versatility, allowing it to thrive in diverse environments and interact with other microorganisms, ultimately influencing community structure and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium sp. GJ21
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Hyphomicrobium sp. GJ21
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomicrobium sp. GJ21 genome assembly, contig:

Gene Summary

Adenine Count

757231 bp

Thymine Count

750643 bp

Guanine Count

1157090 bp

Cytosine Count

1177869 bp

Genome Length

3842833 bp

Protein-coding Genes

4006 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conserved hypothetical proteinHYPGJ_10032P29943Positive38452 - 3875410901.2
putative hlyc/corc family of transporters with 2 cbs domainsHYPGJ_10033Q57017Negative38769 - 4009447767.8
bifunctional: shikimate kinase (n-terminal)HYPGJ_10034Q2YR43Negative40176 - 4187060768.4
hypothetical proteinHYPGJ_10035Not AvailableNegative41857 - 4214710754.6
conserved hypothetical proteinHYPGJ_10036Not AvailablePositive42110 - 422535218.73
conserved exported hypothetical proteinHYPGJ_10037Not AvailablePositive42260 - 4420668504.4
site-specific tyrosine recombinaseHYPGJ_10038Q7ZAN6Positive44215 - 4514433834.6
pyridoxamine 5'-phosphate oxidase-related fmn-binding proteinHYPGJ_10039Not AvailablePositive45210 - 4586924909.0
amino acid/peptide transporterHYPGJ_10040P94408Positive45893 - 4740153618.2
acetylcoa carboxylase, alpha subunitHYPGJ_10041A7ICM4Positive47476 - 4851637555.9

Displaying genes 51 – 60 of 1404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

107 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001140cyclohexyl isocyanideC7H11NChemical structure of cyclohexyl isocyanideNot available
Average109.1689Da
Monoisotopic109.089149357Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da

Displaying 1–10 of 107 metabolites

Health Effects

No health effects information available for this bacterium.