Vibrio coralliirubri strain J2-29

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio coralliirubri strain J2-29 is characterized by its single replicon, which is significant for its genomic organization. The strain is cataloged under the accession number CCKH00000000.1, indicating its genetic sequence is available for further study and analysis. This bacterium falls within the Vibrio genus, which is known for its ecological roles in marine environments, particularly in association with coral ecosystems. Vibrio species, including V. coralliirubri, are often involved in the health and disease dynamics of coral organisms. Their interactions can range from beneficial to pathogenic, influencing coral resilience and overall marine biodiversity. Understanding the genomic characteristics of Vibrio coralliirubri strain J2-29 can provide insights into its potential ecological roles, particularly in the context of coral health. The presence of a single replicon might suggest streamlined genetic regulation and adaptability, which are crucial for survival in fluctuating marine environments. As such, this strain may play a vital role in the microbiome associated with corals, contributing to nutrient cycling or influencing coral stress responses. Further investigation of this strain could illuminate its specific functions and interactions within coral ecosystems, ultimately aiding in the conservation and management of coral reefs.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio coralliirubri
Strainstrain J2-29

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio coralliirubri strain J2-29
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio coralliirubri strain J2-29 genome assembly, contig:

Gene Summary

Adenine Count

1569020 bp

Thymine Count

1563414 bp

Guanine Count

1245336 bp

Cytosine Count

1266628 bp

Genome Length

5644398 bp

Protein-coding Genes

5209 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinVCR29J2_1000011Not AvailablePositive7560 - 77697480.84
hypothetical proteinVCR29J2_1000012Not AvailablePositive7927 - 860125490.5
hypothetical proteinVCR29J2_1000013Not AvailableNegative8673 - 88165290.15
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinaseVCR29J2_1000014Not AvailablePositive8874 - 937118891.4
chain a, 7,8-dihydroneopterin triphosphate epimeraseVCR29J2_1000015P0AC21Positive9469 - 984014172.9
gtp cyclohydrolase iVCR29J2_1000016A7N6L2Positive9859 - 1049723720.6
oxidoreductase, short chain dehydrogenase/reductase familyVCR29J2_1000017A6T8N3Positive10494 - 1121026496.8
ethanolamine operon regulatory proteinVCR29J2_1000018Q9ZFU7Negative11314 - 1225836711.5
ethanolamine ammonia-lyase, large subunit, heavy chainVCR29J2_1000019P0AEJ7Positive12435 - 1384751178.3
ethanolamine ammonia-lyase light chainVCR29J2_1000020Q4UVK6Positive13840 - 1470931845.1

Displaying genes 61 – 70 of 5298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

226 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 226 metabolites

Health Effects

No health effects information available for this bacterium.