Vibrio coralliirubri strain J2-29

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio coralliirubri strain J2-29 is characterized by its single replicon, which is significant for its genomic organization. The strain is cataloged under the accession number CCKH00000000.1, indicating its genetic sequence is available for further study and analysis. This bacterium falls within the Vibrio genus, which is known for its ecological roles in marine environments, particularly in association with coral ecosystems. Vibrio species, including V. coralliirubri, are often involved in the health and disease dynamics of coral organisms. Their interactions can range from beneficial to pathogenic, influencing coral resilience and overall marine biodiversity. Understanding the genomic characteristics of Vibrio coralliirubri strain J2-29 can provide insights into its potential ecological roles, particularly in the context of coral health. The presence of a single replicon might suggest streamlined genetic regulation and adaptability, which are crucial for survival in fluctuating marine environments. As such, this strain may play a vital role in the microbiome associated with corals, contributing to nutrient cycling or influencing coral stress responses. Further investigation of this strain could illuminate its specific functions and interactions within coral ecosystems, ultimately aiding in the conservation and management of coral reefs.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio coralliirubri
Strainstrain J2-29

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio coralliirubri strain J2-29
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio coralliirubri strain J2-29 genome assembly, contig:

Gene Summary

Adenine Count

1569020 bp

Thymine Count

1563414 bp

Guanine Count

1245336 bp

Cytosine Count

1266628 bp

Genome Length

5644398 bp

Protein-coding Genes

5209 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conserved hypothetical proteinVCR29J2_60020Not AvailableNegative3133627 - 313392610813.9
putative peptidyl-prolyl cis-trans isomerase (rotamase d)VCR29J2_60021P0ADY2Negative3134152 - 313601768584.2
dna-binding protein hu-betaVCR29J2_60022Not AvailableNegative3136236 - 313652910147.1
atp-dependent protease laVCR29J2_60023P74956Negative3136698 - 313904987627.2
atp-dependent clp protease atp-binding subunit clpxVCR29J2_60024B7VHZ9Negative3139182 - 314046246813.9
atp-dependent clp protease proteolytic subunitVCR29J2_60025B7VI00Negative3140544 - 314117023104.8
trigger factorVCR29J2_60026B7VI01Negative3141276 - 314257448056.2
hypothetical proteinVCR29J2_60027Not AvailableNegative3142574 - 31427055052.19
putative signal transduction histidine kinase regulating c4-dicarboxylate transport systemVCR29J2_60028Q9HU20Positive3143215 - 314505369553.0
c4-dicarboxylate transport transcriptional regulatory protein dctdVCR29J2_60029Not AvailablePositive3145064 - 314641050128.2

Displaying genes 2971 – 2980 of 5298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

226 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 226 metabolites

Health Effects

No health effects information available for this bacterium.