Photobacterium kishitanii strain ANT-2200

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium kishitanii strain ANT-2200 is a bacterium notable for its flagella presence, indicating its capability for motility. This feature may facilitate its interaction with various environments, including aquatic ecosystems where it can be found. The strain possesses a single replicon, suggesting a streamlined genomic structure that could be advantageous for its adaptability and survival. This particular strain has been identified as a host-associated organism, specifically with Oncorhynchus mykiss, commonly known as the rainbow trout. This association implies that P. kishitanii may play a role in the microbiome of this fish species, potentially influencing its health and ecological dynamics. The relationship between the bacterium and its host could shed light on the microbial interactions that support the well-being of aquatic organisms. The accession number for Photobacterium kishitanii strain ANT-2200 is CCAR000000000.2, which provides a reference point for further genomic and ecological studies. Understanding such microbial-host interactions is essential for comprehending the broader ecological roles that bacteria play in aquatic environments, particularly in relation to fish health and the maintenance of biodiversity in these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium kishitanii
Strainstrain ANT-2200

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium kishitanii strain ANT-2200 genome assembly, contig:

Gene Summary

Adenine Count

1557531 bp

Thymine Count

1554378 bp

Guanine Count

991850 bp

Cytosine Count

987991 bp

Genome Length

5091755 bp

Protein-coding Genes

4540 genes

Non-Coding Genes

293 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaa,dna-binding transcriptional dual regulatorPPBDW_I10062Not AvailablePositive87582 - 8897952957.4
dna polymerase iii, beta subunitPPBDW_I10063Not AvailablePositive88981 - 9008140773.8
Ribosomal rna 16s ribosomal rnaNot AvailableNot AvailablePositive90054 - 91586Not Available
gap repair proteinPPBDW_I10064Not AvailablePositive90084 - 9116640852.3
dna gyrase, subunit b (type ii topoisomerase)PPBDW_I10065Not AvailablePositive91182 - 9360289859.6
Ribosomal rna 5s ribosomal rnaNot AvailableNot AvailablePositive92009 - 92123Not Available
Ribosomal rna 23s ribosomal rnaNot AvailableNot AvailablePositive92262 - 95153Not Available
valine-pyruvate aminotransferasePPBDW_I10066Not AvailableNegative93698 - 9494846132.6
Ribosomal rna 5s ribosomal rnaNot AvailableNot AvailablePositive95173 - 95287Not Available
glycine trna synthetase, beta subunitPPBDW_I10067Not AvailableNegative95185 - 9725475374.5

Displaying genes 261 – 270 of 1372 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.