Photobacterium kishitanii strain ANT-2200

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium kishitanii strain ANT-2200 is a bacterium notable for its flagella presence, indicating its capability for motility. This feature may facilitate its interaction with various environments, including aquatic ecosystems where it can be found. The strain possesses a single replicon, suggesting a streamlined genomic structure that could be advantageous for its adaptability and survival. This particular strain has been identified as a host-associated organism, specifically with Oncorhynchus mykiss, commonly known as the rainbow trout. This association implies that P. kishitanii may play a role in the microbiome of this fish species, potentially influencing its health and ecological dynamics. The relationship between the bacterium and its host could shed light on the microbial interactions that support the well-being of aquatic organisms. The accession number for Photobacterium kishitanii strain ANT-2200 is CCAR000000000.2, which provides a reference point for further genomic and ecological studies. Understanding such microbial-host interactions is essential for comprehending the broader ecological roles that bacteria play in aquatic environments, particularly in relation to fish health and the maintenance of biodiversity in these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium kishitanii
Strainstrain ANT-2200

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium kishitanii strain ANT-2200 genome assembly, contig:

Gene Summary

Adenine Count

1557531 bp

Thymine Count

1554378 bp

Guanine Count

991850 bp

Cytosine Count

987991 bp

Genome Length

5091755 bp

Protein-coding Genes

4540 genes

Non-Coding Genes

293 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPPBDW_I10054Not AvailableNegative83953 - 842109508.64
protein c5 component of rnase pPPBDW_I10055Not AvailableNegative84177 - 8450012406.1
50s ribosomal protein l34PPBDW_I10056Not AvailableNegative84549 - 846835154.48
hypothetical proteinPPBDW_I10057Not AvailableNegative84706 - 848344704.72
putative transporter subunit: atp-binding component of abc superfamily transporterPPBDW_I10058Not AvailableNegative84867 - 8560427169.8
Ribosomal rna 5s ribosomal rnaNot AvailableNot AvailablePositive85822 - 85936Not Available
Ribosomal rna 23s ribosomal rnaNot AvailableNot AvailablePositive86075 - 88966Not Available
putative transporter subunit: permease component of abc superfamily transporterPPBDW_I10059Not AvailableNegative85601 - 8627224917.4
putative amino-acid abc transporter-binding protein pathPPBDW_I10060Not AvailableNegative86352 - 8710727689.3
hypothetical proteinPPBDW_I10061Not AvailableNegative87228 - 873625131.32

Displaying genes 251 – 260 of 1372 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.