Photobacterium kishitanii strain ANT-2200

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium kishitanii strain ANT-2200 is a bacterium notable for its flagella presence, indicating its capability for motility. This feature may facilitate its interaction with various environments, including aquatic ecosystems where it can be found. The strain possesses a single replicon, suggesting a streamlined genomic structure that could be advantageous for its adaptability and survival. This particular strain has been identified as a host-associated organism, specifically with Oncorhynchus mykiss, commonly known as the rainbow trout. This association implies that P. kishitanii may play a role in the microbiome of this fish species, potentially influencing its health and ecological dynamics. The relationship between the bacterium and its host could shed light on the microbial interactions that support the well-being of aquatic organisms. The accession number for Photobacterium kishitanii strain ANT-2200 is CCAR000000000.2, which provides a reference point for further genomic and ecological studies. Understanding such microbial-host interactions is essential for comprehending the broader ecological roles that bacteria play in aquatic environments, particularly in relation to fish health and the maintenance of biodiversity in these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium kishitanii
Strainstrain ANT-2200

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium kishitanii strain ANT-2200 genome assembly, contig:

Gene Summary

Adenine Count

1557531 bp

Thymine Count

1554378 bp

Guanine Count

991850 bp

Cytosine Count

987991 bp

Genome Length

5091755 bp

Protein-coding Genes

4540 genes

Non-Coding Genes

293 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n5-carboxyaminoimidazole ribonucleotide synthasePPBDW_I10007Not AvailablePositive36345 - 3746340432.9
putative dna topoisomerasePPBDW_I10008Not AvailableNegative37527 - 3808721027.4
conserved hypothetical proteinPPBDW_I10009Not AvailableNegative38090 - 3856318482.0
conserved hypothetical proteinPPBDW_I10010Not AvailableNegative38566 - 3967239533.6
lysm domain proteinPPBDW_I10011Not AvailableNegative39672 - 4074239770.2
peptide deformylasePPBDW_I10012Not AvailablePositive41090 - 4159018454.3
10-formyltetrahydrofolate:l-methionyl- trna(fmet) n-formyltransferasePPBDW_I10013Not AvailablePositive41615 - 4255933979.9
16s rrna m5c967 methyltransferase,s-adenosyl-l-methionine-dependentPPBDW_I10014Not AvailablePositive42645 - 4392547412.9
nad-binding component of trk potassium transporterPPBDW_I10015Not AvailablePositive44052 - 4542850408.7
trk system potassium uptake proteinPPBDW_I10016Not AvailablePositive45435 - 4688052140.6

Displaying genes 201 – 210 of 1372 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.