Bacteroides xylanisolvens SD CC 1b

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides xylanisolvens SD CC 1b is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This species possesses flagella, which facilitate motility in its environment. It has a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number CBXG000000000.1. As an anaerobe, Bacteroides xylanisolvens SD CC 1b plays a significant role in environments devoid of oxygen, commonly found in the human gut microbiome. Its ability to thrive in such conditions is critical for the breakdown of complex carbohydrates, particularly xylan, which is a major component of plant cell walls. This metabolic capability suggests that Bacteroides xylanisolvens SD CC 1b may contribute to the fermentation processes within the gastrointestinal tract, aiding in the digestion of dietary fibers and promoting gut health. In an ecological context, the presence of Bacteroides xylanisolvens SD CC 1b highlights the importance of microbial diversity in maintaining a balanced gut microbiome. The breakdown of plant polysaccharides not only supports the host's nutritional needs but also influences the overall microbial community structure and functionality. Thus, this bacterium exemplifies the intricate relationships between gut microbes and their host, underscoring their roles in digestion and nutrient absorption.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides xylanisolvens
StrainSD CC 1b

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides xylanisolvens SD CC 1b
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides xylanisolvens SD CC 1b


Gene Summary

Adenine Count

1860430 bp

Thymine Count

1901289 bp

Guanine Count

1398603 bp

Cytosine Count

1323709 bp

Genome Length

6484037 bp

Protein-coding Genes

5479 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative radical sam domain proteinBN890_41400Not AvailablePositive4762669 - 476358635423.4
Nucleotide-sugar epimeraseBN890_41410Not AvailablePositive4763657 - 476446630524.7
Putative terminase small subunitBN890_41420Not AvailablePositive4764559 - 476510120780.7
Terminase large subunitBN890_41430Not AvailablePositive4765163 - 476717876703.1
Portal proteinBN890_41440Not AvailablePositive4767305 - 476875054427.5
1_nc_021802: phage prohead protease proteinBN890_41450Not AvailablePositive4768704 - 476976539917.1
Major capsid proteinBN890_41460Not AvailablePositive4769783 - 477136058227.1
trna-hypothetical proteinNot AvailableNot AvailablePositive1 - 150418.01
Trna-5s rnaNot AvailableNot AvailablePositive39 - 148Not Available
hypothetical proteinBN890_10Not AvailableNegative512 - 6645911.39

Displaying genes 61 – 70 of 284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

460 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 460 metabolites

Health Effects

No health effects information available for this bacterium.