Corynebacterium casei UCMA 3821

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Corynebacteriaceae

Genus

Corynebacterium

Description

Corynebacterium casei UCMA 3821 is characterized by its single replicon, indicating a streamlined genomic organization that may contribute to its efficiency in various environments. The genome of this strain is cataloged under the accession number CAFW00000000.1, which provides a reference point for researchers studying its genetic makeup and potential applications. Corynebacterium species, including C. casei, are commonly found in diverse habitats, particularly in dairy environments, where they play significant roles in fermentation processes. Their ability to metabolize various substrates can influence the flavor and texture of dairy products. Understanding the genomic traits of C. casei UCMA 3821 could shed light on its functional capabilities and its interactions within microbial communities. This strain may also have implications for industrial microbiology, particularly in the production of fermented foods. The single replicon may afford metabolic advantages, allowing for quicker adaptation to changing environments. As such, studying C. casei UCMA 3821 could yield insights into the ecological dynamics of bacteria in fermentation processes and their potential applications in food technology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyCorynebacteriaceae
GenusCorynebacterium
SpeciesCorynebacterium casei
StrainUCMA 3821

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Corynebacterium casei UCMA 3821
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcheese
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Corynebacterium casei UCMA 3821


Gene Summary

Adenine Count

696014 bp

Thymine Count

694148 bp

Guanine Count

867786 bp

Cytosine Count

854787 bp

Genome Length

3112736 bp

Protein-coding Genes

2701 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formamidaseCCAS_00075Not AvailablePositive9002 - 1002137970.7
Trna-metNot AvailableNot AvailablePositive12727 - 12803Not Available
helix-turn-helix domain-containing proteinCCAS_00110Not AvailablePositive14748 - 149938936.85
putative conjugal transfer proteinCCAS_00115Not AvailableNegative15148 - 18564124838.0
putative uncharacterized proteinCCAS_00125Not AvailableNegative19172 - 1981622656.2
siderophore-interacting proteinCCAS_00130Not AvailablePositive19901 - 2079133006.2
putative uncharacterized proteinCCAS_00135Not AvailablePositive20788 - 2137821471.1
abc transporter, atp-binding subunitCCAS_00140Not AvailablePositive21375 - 2283552048.6
putative uncharacterized proteinCCAS_00150Not AvailableNegative23692 - 238324988.74
putative uncharacterized proteinCCAS_00155Not AvailableNegative24204 - 244107247.51

Displaying genes 11 – 20 of 2754 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

17 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da

Displaying 1–10 of 17 metabolites

Health Effects

No health effects information available for this bacterium.