Vibrio harveyi GAN1709

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio harveyi GAN1709 is a Gram-negative bacterium predominantly found in marine habitats, particularly within aquaculture settings and the Changjiang estuary. It is mesophilic, indicating it thrives at moderate temperatures. This organism is motile due to the presence of flagella and possesses a single replicon, which is characteristic of its genetic structure. Vibrio harveyi GAN1709 has a wide range of hosts, including various species of fish and crustaceans, such as Homo sapiens, Hippocampus abdominalis, Penaeus vannamei, and several species of Epinephelus and Hippocampus. The bacterium is known to cause several health issues in these hosts, including septicaemia, vibriosis, gastroenteritis, and infections that can lead to mass mortality in seahorses. Other pathological effects include muscle necrosis, skin ulcers, scale drop, and various forms of hemorrhage and nodules. The health impacts of Vibrio harveyi GAN1709 are significant, particularly in aquaculture, where it can lead to severe economic losses due to fish and crustacean infections. The presence of this bacterium poses a risk for both cultivated aquatic species and, by extension, human health, given its ability to infect humans. Understanding the ecology of V. harveyi GAN1709 and its interactions within marine environments is crucial for managing aquaculture health and mitigating the risks associated with vibriosis outbreaks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio harveyi
StrainGAN1709

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Vibrio harveyi GAN1709
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
Habitataquaculture; Changjiang estuary; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Hippocampus abdominalis, Hippocampinae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio harveyi GAN1709 DNA, contig00256, whole genome shotgun

Gene Summary

Adenine Count

1729124 bp

Thymine Count

1729972 bp

Guanine Count

1406309 bp

Cytosine Count

1397307 bp

Genome Length

6265473 bp

Protein-coding Genes

5550 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinVH1709_contig00008-0076Not AvailablePositive90971 - 9124010125.8
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseVH1709_contig00008-0077Not AvailableNegative91307 - 9186421234.3
excinuclease abc subunit cVH1709_contig00008-0078Not AvailableNegative91911 - 9367766638.3
response regulatorVH1709_contig00008-0079Not AvailableNegative93745 - 9438923798.9
dna polymerase iiVH1709_contig00008-0080Not AvailablePositive94800 - 9718491144.9
nucleotidyltransferaseVH1709_contig00008-0081Not AvailableNegative97224 - 9799128970.2
elongation factor p-like protein yeipVH1709_contig00008-0082Not AvailablePositive98178 - 9874420832.6
dsdna-mimic proteinVH1709_contig00008-0083Not AvailablePositive98747 - 9906712240.2
pseudouridine synthase family 1 proteinVH1709_contig00008-0084Not AvailableNegative99232 - 10017036028.3
calcium-binding proteinVH1709_contig00008-0085Not AvailablePositive100515 - 10122525115.5

Displaying genes 121 – 130 of 5656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm0014067p-Aminobenzoic acidC7H7NO2Chemical structure of p-Aminobenzoic acid150-13-0
Average137.136Da
Monoisotopic137.047678473Da

Displaying 1–6 of 6 metabolites

Health Effects

Health ConditionRelationReference
Infections in fishCausesPMC12873115
VibriosisCausesPMC13255019
Mass mortality of seahorsesCausesPMC13255019
VibriosisCausesPMC13411935
VibriosisCausesPMC8416912
GastroenteritisCausesPMC8416912
SepticaemiaCausesPMC8416912
Fish and crustacean infectionsCausesPMC9525291
Scale dropCausesPMC9769913
Muscle necrosisCausesPMC9769913

Displaying health effects 1 – 10 of 19 in total