Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ditp/xtp pyrophosphatase | PDPJ_1_00883 | Not Available | Positive | 850335 - 850928 | 21554.4 |
| oxygen-independent coproporphyrinogen-iii oxidase 1 | PDPJ_1_00884 | Not Available | Positive | 850928 - 852088 | 43423.3 |
| hypothetical protein | PDPJ_1_00885 | Not Available | Negative | 852163 - 852567 | 15351.7 |
| glutaminase 2 | PDPJ_1_00886 | Not Available | Negative | 852613 - 853533 | 32952.7 |
| trna (guanine-n(7)-)-methyltransferase | PDPJ_1_00887 | Not Available | Negative | 853652 - 854389 | 27840.5 |
| a/g-specific adenine glycosylase | PDPJ_1_00888 | Not Available | Positive | 854597 - 855667 | 40477.7 |
| putative fe(2+)-trafficking protein | PDPJ_1_00889 | Not Available | Positive | 855781 - 856053 | 10574.7 |
| Trna-phe | Not Available | Not Available | Positive | 856265 - 856340 | Not Available |
| Trna-asn | Not Available | Not Available | Positive | 856381 - 856456 | Not Available |
| Trna-thr | Not Available | Not Available | Positive | 856509 - 856584 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

