Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor 4 | PDPJ_1_00833 | Not Available | Negative | 809192 - 810988 | 66043.5 |
| soxr reducing system protein rsec | PDPJ_1_00834 | Not Available | Negative | 811066 - 811563 | 17495.4 |
| sigma-e factor regulatory protein rseb precursor | PDPJ_1_00835 | Not Available | Negative | 811578 - 812558 | 36580.1 |
| anti-sigma-e factor rsea | PDPJ_1_00836 | Not Available | Negative | 812558 - 813229 | 24359.6 |
| ecf rna polymerase sigma-e factor | PDPJ_1_00837 | Not Available | Negative | 813229 - 813807 | 21879.1 |
| l-aspartate oxidase | PDPJ_1_00838 | Not Available | Positive | 814221 - 815837 | 60067.2 |
| hypothetical protein | PDPJ_1_00839 | Not Available | Negative | 815885 - 816271 | 15434.0 |
| antitoxin cptb | PDPJ_1_00840 | Not Available | Negative | 816306 - 816566 | 9843.84 |
| pp_00841 | PDPJ_1_00841 | Not Available | Positive | 816835 - 817806 | Not Available |
| cys-trna(pro)/cys-trna(cys) deacylase ybak | PDPJ_1_00842 | Not Available | Positive | 817813 - 818280 | 16861.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

