Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome maturation factor rimm | PDPJ_1_00795 | Not Available | Negative | 764246 - 764779 | 20045.7 |
| 30s ribosomal protein s16 | PDPJ_1_00796 | Not Available | Negative | 764806 - 765057 | 9163.15 |
| signal recognition particle protein | PDPJ_1_00797 | Not Available | Negative | 765229 - 766596 | 50162.5 |
| inner membrane protein ypjd | PDPJ_1_00798 | Not Available | Positive | 766798 - 767595 | 29179.2 |
| magnesium and cobalt efflux protein corc | PDPJ_1_00799 | Not Available | Positive | 767638 - 768915 | 47315.1 |
| s-ribosylhomocysteine lyase | PDPJ_1_00800 | Not Available | Negative | 769019 - 769534 | 18951.8 |
| hypothetical protein | PDPJ_1_00801 | Not Available | Negative | 769573 - 770184 | 23878.3 |
| glutamate--cysteine ligase | PDPJ_1_00802 | Not Available | Negative | 770308 - 771873 | 59264.0 |
| peptidase m16 inactive domain protein | PDPJ_1_00803 | Not Available | Negative | 772028 - 774874 | 105284.0 |
| inner membrane protein yqaa | PDPJ_1_00804 | Not Available | Negative | 775079 - 775333 | 8932.86 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

