Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylic acid transporter daua | PDPJ_1_00679 | Not Available | Negative | 628677 - 630383 | 60458.0 |
| acyl-coenzyme a dehydrogenase | PDPJ_1_00680 | Not Available | Positive | 630906 - 633356 | 89558.6 |
| hypothetical protein | PDPJ_1_00681 | Not Available | Negative | 633385 - 634095 | 27048.4 |
| hypothetical protein | PDPJ_1_00682 | Not Available | Negative | 634210 - 634620 | 15541.8 |
| dna polymerase iii subunit epsilon | PDPJ_1_00683 | Not Available | Negative | 634622 - 635347 | 26938.3 |
| ribonuclease hi | PDPJ_1_00684 | Not Available | Positive | 635399 - 635860 | 17485.5 |
| hypothetical protein | PDPJ_1_00685 | Not Available | Negative | 635861 - 636652 | 30175.5 |
| hydroxyacylglutathione hydrolase | PDPJ_1_00686 | Not Available | Positive | 636694 - 637452 | 27948.1 |
| membrane-bound lytic murein transglycosylase d precursor | PDPJ_1_00687 | Not Available | Positive | 637523 - 639073 | 58199.9 |
| yip1 domain protein | PDPJ_1_00688 | Not Available | Positive | 639089 - 639781 | 26084.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

