Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease iii | PDPJ_1_00565 | Not Available | Positive | 518745 - 519551 | 30933.8 |
| ribosomal protein s12 methylthiotransferase accessory factor ycao | PDPJ_1_00566 | Not Available | Positive | 519772 - 521520 | 65969.5 |
| putative formate transporter 1 | PDPJ_1_00567 | Not Available | Positive | 522035 - 522907 | 31604.2 |
| formate acetyltransferase 1 | PDPJ_1_00568 | Not Available | Positive | 522963 - 525236 | 84239.2 |
| collagenase | PDPJ_1_00569 | Not Available | Negative | 525509 - 526231 | 27240.7 |
| hypothetical protein | PDPJ_1_00570 | Not Available | Negative | 526507 - 526728 | 8291.33 |
| hypothetical protein | PDPJ_1_00571 | Not Available | Negative | 526777 - 527052 | 10458.7 |
| putative protease yhbu precursor | PDPJ_1_00572 | Not Available | Negative | 527254 - 527688 | 16379.4 |
| hypothetical protein | PDPJ_1_00573 | Not Available | Positive | 527796 - 528071 | 10458.7 |
| hypothetical protein | PDPJ_1_00574 | Not Available | Positive | 528120 - 528341 | 8291.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

