Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-deoxynucleotidase yfbr | PDPJ_1_00490 | Not Available | Positive | 441609 - 442193 | 22306.8 |
| deoxyguanosinetriphosphate triphosphohydrolase | PDPJ_1_00491 | Not Available | Positive | 442193 - 443521 | 50905.8 |
| integrase core domain protein | PDPJ_1_00492 | Not Available | Negative | 443737 - 444450 | 27688.4 |
| transposase | PDPJ_1_00493 | Not Available | Negative | 444585 - 444881 | 11177.5 |
| dtw domain protein | PDPJ_1_00494 | Not Available | Negative | 444977 - 445594 | 23178.8 |
| rhomboid family protein | PDPJ_1_00495 | Not Available | Positive | 445604 - 446161 | 20285.9 |
| putative s-adenosyl-l-methionine-dependent methyltransferase tehb | PDPJ_1_00496 | Not Available | Positive | 446248 - 446586 | 12748.9 |
| hypothetical protein | PDPJ_1_00497 | Not Available | Negative | 446821 - 447042 | 8291.33 |
| hypothetical protein | PDPJ_1_00498 | Not Available | Negative | 447091 - 447366 | 10458.7 |
| come operon protein 1 | PDPJ_1_00499 | Not Available | Negative | 447459 - 447746 | 10432.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

