Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maf-like protein ycef | PDPJ_1_00310 | Not Available | Positive | 263087 - 263683 | 22068.6 |
| ribosomal large subunit pseudouridine synthase c | PDPJ_1_00311 | Not Available | Negative | 263762 - 264709 | 35999.7 |
| ribonuclease e | PDPJ_1_00312 | Not Available | Positive | 265292 - 268585 | 124179.0 |
| bicarbonate transporter bica | PDPJ_1_00313 | Not Available | Positive | 268893 - 269240 | 12123.0 |
| c4-dicarboxylic acid transporter daua | PDPJ_1_00314 | Not Available | Positive | 269329 - 270432 | 39583.6 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | PDPJ_1_00315 | Not Available | Positive | 270556 - 271578 | 36116.7 |
| cobalamin synthase | PDPJ_1_00316 | Not Available | Positive | 271593 - 272174 | 21607.7 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | PDPJ_1_00317 | Not Available | Positive | 272391 - 272996 | 22458.7 |
| phosphate-starvation-inducible protein psie | PDPJ_1_00318 | Not Available | Positive | 273167 - 273583 | 15728.8 |
| anaerobic c4-dicarboxylate transporter dcub | PDPJ_1_00319 | Not Available | Negative | 273664 - 274992 | 47684.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

