Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PDPJ_1_01400 | Not Available | Positive | 1382907 - 1383380 | 18422.9 |
| dna topoisomerase 1 | PDPJ_1_01401 | Not Available | Positive | 1383559 - 1384038 | 18045.9 |
| n5-carboxyaminoimidazole ribonucleotide synthase | PDPJ_1_01402 | Not Available | Negative | 1384106 - 1385227 | 40840.0 |
| n5-carboxyaminoimidazole ribonucleotide mutase | PDPJ_1_01403 | Not Available | Negative | 1385230 - 1385715 | 16898.4 |
| threonylcarbamoyl-amp synthase | PDPJ_1_01404 | Not Available | Positive | 1385909 - 1386466 | 20239.0 |
| coproporphyrinogen-iii oxidase, aerobic | PDPJ_1_01405 | Not Available | Positive | 1386470 - 1387381 | 35287.5 |
| shikimate dehydrogenase | PDPJ_1_01406 | Not Available | Positive | 1387390 - 1388217 | 29483.2 |
| hypothetical protein | PDPJ_1_01407 | Not Available | Positive | 1388224 - 1388490 | 10137.0 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | PDPJ_1_01408 | Not Available | Negative | 1388480 - 1389031 | 20312.6 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 1389422 - 1390961 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

