Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. piscicida |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1332071 bp
Thymine Count
1333580 bp
Guanine Count
937706 bp
Cytosine Count
943894 bp
Genome Length
4547251 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
177 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine--trna ligase alpha subunit | PDPJ_1_01320 | Not Available | Positive | 1306796 - 1307707 | 34799.4 |
| glycine--trna ligase beta subunit | PDPJ_1_01321 | Not Available | Positive | 1307717 - 1309786 | 75831.8 |
| valine--pyruvate aminotransferase | PDPJ_1_01322 | Not Available | Positive | 1310007 - 1311257 | 46770.3 |
| dna gyrase subunit b | PDPJ_1_01323 | Not Available | Negative | 1311304 - 1313715 | 89650.4 |
| dna replication and repair protein recf | PDPJ_1_01324 | Not Available | Negative | 1313735 - 1314817 | 40637.0 |
| dna polymerase iii subunit beta | PDPJ_1_01325 | Not Available | Negative | 1314821 - 1315918 | 40503.6 |
| chromosomal replication initiator protein dnaa | PDPJ_1_01326 | Not Available | Negative | 1315920 - 1317344 | 53293.0 |
| putative amino-acid-binding protein yxem precursor | PDPJ_1_01327 | Not Available | Positive | 1317786 - 1318397 | 22506.8 |
| hypothetical protein | PDPJ_1_01328 | Not Available | Positive | 1318505 - 1318801 | 11308.4 |
| putative transposase | PDPJ_1_01329 | Not Available | Positive | 1318924 - 1319646 | 28239.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

